Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20verrucosa_20[genbank_20GCA_5F002099365.1_202017-04-18] 15 sequences; 35,456,005 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq8 156 6e-32 seq1 96.9 5e-14 >seq8 Length=1658097 Score = 156 bits (172), Expect = 6e-32 Identities = 212/293 (72%), Gaps = 2/293 (1%) Strand=Plus/Plus Query 259894 CATGTCGCAGCAGTTGTTCACCTCA-GCGACGCCCACGCTCTTTAATGCCGGCACGCCGC 259952 |||||| ||| ||| ||||| ||| || | ||||||||||| |||||||| || || | Sbjct 1350248 CATGTCCCAGAAGTGCTTCAC-TCATGCATCACCCACGCTCTTCAATGCCGGAACACCAC 1350306 Query 259953 GCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCT 260012 || ||| || || ||||| || | |||||||||| ||| ||||||||||||| Sbjct 1350307 AACCTCAGCTGTCCTCTTGCTTCTTGATCGACATGAAGGATGATAGCATCGAGGGCATCT 1350366 Query 260013 ATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCG 260072 | |||||||||||| || || | ||||||||| | || || ||||||||| | | Sbjct 1350367 ACGACACGCTCAAGACCTGTGCCATGATCTCCAAGACCGCTGGTGGCATCGGTCTCAATG 1350426 Query 260073 CACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCC 260132 | ||| | || || | ||| |||| | || || ||||| || || || || | Sbjct 1350427 CTCACTGCATTCGTGCAACTGGCTCCTATATTGCAGGAACCAATGGGACATCAAATGGAC 1350486 Query 260133 TTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAGTGC 260185 | | |||||| | || ||||| ||| ||||||| ||||||||||||||| || Sbjct 1350487 TCATTCCCATGTTGCGTGTTTTCAACAACACGGCCCGCTACGTCGACCAGGGC 1350539 Score = 91.5 bits (100), Expect = 2e-12 Identities = 292/451 (65%), Gaps = 16/451 (4%) Strand=Plus/Plus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 |||||| |||||| || || || ||| |||| |||| ||||||||||| ||| || Sbjct 1350537 GGCGGCAACAAGCGACCCGGTGCTTTCGCCATCTACTTGGAGCCGTGGCACGCTGACGTC 1350596 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 || | | ||| | || | ||||||||||||||||| || | ||| || || | Sbjct 1350597 TTCGATTTCCTGAATCTGAGAAAGAACCACGGCAAGGAAGAAGT----CCGTGCCCGTG- 1350651 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967 | || || || | ||||||| ||| |||| ||| || | | || || Sbjct 1350652 -ACCTGTTCTATGCTATGTGGACCCCTGACTTGTTCATGGAGCGTGTCGAGAAGAACCAG 1350710 Query 261968 GACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGGCC 262027 || ||| | || || ||||| ||||| || || ||| ||| |||||||| | Sbjct 1350711 GAGTGGACTCTTTTCTGCCCTCATGAGGCTCCAGGTCTGGCCGATGTCTATGGCGACGAG 1350770 Query 262028 TTTGACGCCCTCTATGAGNNNNNNNNNNNNNNNNNNNNNNCGCG---GACCGTCGTGCCC 262084 || | | ||||| ||| || ||||||| | || Sbjct 1350771 TTCCAGGAGCTCTACGAGAGATATGAAAAAGAGGGCCGTGGCCGTCAGACCGTCAAGGCC 1350830 Query 262085 GCACGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATG 262144 || || || | |||| || ||| | | ||| || | ||||| || || ||||||||| Sbjct 1350831 -CA-GA-AGCTGTGGTATGCGATTCTTGAGGCTCAGACTGAGACTGGGACTCCCTACATG 1350887 Query 262145 GTCTACAAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA--CGACAG 262202 |||||||||| ||| ||| || ||||||||| ||||| ||||||||| ||| || Sbjct 1350888 CTCTACAAGGATGCCTGCAATAGGAAGAGCAACCAGAAGAACTTGGGCACCATTCGA-AG 1350946 Query 262203 AGGCCAACCTGTGCACCGAGATCGTCCAGTT 262233 | || || ||||||||||||||| |||| Sbjct 1350947 CT-CAAATCTCTGCACCGAGATCGTCGAGTT 1350976 >seq1 Length=4142182 Score = 96.9 bits (106), Expect = 5e-14 Identities = 188/271 (69%), Gaps = 15/271 (6%) Strand=Plus/Plus Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || || ||||||||||| | ||||| ||||| |||||||| ||||| ||||| || Sbjct 2622018 ATGGAGAATATCCACTCTGAGATGTACTCACTCCTCATCGACACATACGTGAAGGATCCC 2622077 Query 1456072 GTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCC 1456131 |||||| |||| || || |||||||| | || | | |||| |||||| Sbjct 2622078 AAAGAGAAGACATACCTGTTCGATGCTATCGACACCATCCCCTGCATACGGAAGAAGGCC 2622137 Query 1456132 GACTGGGCGATGAAGTGGATC---AACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTC 1456187 |||||||| | | |||||| | |||||| || |||||| || | || || Sbjct 2622138 GACTGGGCTCTTAGATGGATCTCTGATAAGGAG----TC--CACTTTCGCTCAACGACTG 2622191 Query 1456188 GTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGG--CAGTTTCTGCGCCATCTTTT 1456244 || | || || | ||||||||| ||||| ||||| || || || || | ||||| | Sbjct 2622192 GTTGCTTTCGCAGCCGTCGAGGGTATCTTCTTCTCCGGATCATTTGCT--TCAATCTTCT 2622249 Query 1456245 GGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||||||||| || || ||||| ||||| Sbjct 2622250 GGCTCAAGAGCAAGGGTCTGATGCCAGGTCT 2622280 Score = 86.0 bits (94), Expect = 9e-11 Identities = 98/129 (76%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 1456518 AGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGG 1456577 || || |||||||||| || |||| || || |||||||| | | ||| |||| || | Sbjct 2622385 AGAAGGTCATCGTCGAAGCAGTCGCTATTGAAAAAGAGTTCCTAACTGAGGCGCTCCCTG 2622444 Query 1456578 TGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGA 1456637 | | | | ||||||||| | | |||||||||||||||||||| | ||||||||||| Sbjct 2622445 TCGGCTTGCTGGGCATGAACTCTAA-GCTCATGTGCCAGTACATTG-AGTTTGTCGCCGA 2622502 Query 1456638 CCGCCTGCT 1456646 ||| |||| Sbjct 2622503 CCGTTTGCT 2622511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177809753222430