Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20verrucosa_20[genbank_20GCA_5F002099365.1_202017-04-18] 15 sequences; 35,456,005 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq8 226 3e-54 seq2 120 3e-22 >seq8 Length=1658097 Score = 226 bits (250), Expect = 3e-54 Identities = 474/704 (67%), Gaps = 2/704 (0%) Strand=Plus/Plus Query 53242 TGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAA 53301 |||||| ||| || | ||| ||| |||| ||| || || || | || || || ||||| Sbjct 1350233 TGAGACATACAACCTCATGTCCCAGAAGTGCTTCACTCATGCATCACCCACGCTCTTCAA 1350292 Query 53302 CGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361 || || || || |||||| |||| |||||| || | | ||||||||||| Sbjct 1350293 TGCCGGAACACCACAACCTCAGCTGTCCTCTTGCTTCTTGATCGACATGAAGGATGATAG 1350352 Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGG 53421 ||||| ||||||||||| ||||||||| |||||| ||||||||| | ||||| Sbjct 1350353 CATCGAGGGCATCTACGACACGCTCAAGACCTGTGCCATGATCTCCAAGACCGCTGGTGG 1350412 Query 53422 TATCGGTATCCACTGCTCGAA-CGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACG 53480 |||||| || | ||||| | | ||||| | ||| | || || || || | Sbjct 1350413 CATCGGTCTCAA-TGCTCACTGCATTCGTGCAACTGGCTCCTATATTGCAGGAACCAATG 1350471 Query 53481 GCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCA 53540 | | ||||| || | || ||| | || || ||||||||||||||||| |||||| Sbjct 1350472 GGACATCAAATGGACTCATTCCCATGTTGCGTGTTTTCAACAACACGGCCCGCTACGTCG 1350531 Query 53541 ACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCG 53600 ||||||| || ||||| || | |||||||||||| | |||||||||||||| | Sbjct 1350532 ACCAGGGCGGCAACAAGCGACCCGGTGCTTTCGCCATCTACTTGGAGCCGTGGCACGCTG 1350591 Query 53601 ACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTG 53660 || | | || || || | ||| | ||| || || | ||||| | || ||||| Sbjct 1350592 ACGTCTTCGATTTCCTGAATCTGAGAAAGAACCACGGCAAGGAAGAAGTCCGTGCCCGTG 1350651 Query 53661 ACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGG 53720 ||||||| ||| |||||| || ||| | |||||| | || |||||| || ||| Sbjct 1350652 ACCTGTTCTATGCTATGTGGACCCCTGACTTGTTCATGGAGCGTGTCGAGAAGAACCAGG 1350711 Query 53721 AGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGT 53780 ||||| || | ||||| | ||| || || || | |||||| || || |||| Sbjct 1350712 AGTGGACTCTTTTCTGCCCTCATGAGGCTCCAGGTCTGGCCGATGTCTATGGCGACGAGT 1350771 Query 53781 TTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGC 53840 | | ||| | || || || | | ||||||| | ||| |||||||| | Sbjct 1350772 TCCAGGAGCTCTACGAGAGATATGAAAAAGAGGGCCGTGGCCGTCAGACCGTCAAGGCCC 1350831 Query 53841 GTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCT 53900 || | ||| |||| || || || ||| ||||| || || || |||||| || Sbjct 1350832 AGAAGCTGTGGTATGCGATTCTTGAGGCTCAGACTGAGACTGGGACTCCCTACATGCTCT 1350891 Query 53901 ACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGC 53944 |||||||| | ||| ||||||||||||||||||| | ||| Sbjct 1350892 ACAAGGATGCCTGCAATAGGAAGAGCAACCAGAAGAACTTGGGC 1350935 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||||| || ||||| || || ||||| |||||||| || | |||||| |||||||| Sbjct 1351455 CGCAACTCTCTCCTCGTTGCTCCTATGCCTACCGCGTCAACCTCCCAGATCCTGGGCAAC 1351514 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 ||||| |||||||| || || ||||||||||| || || ||| || |||||| Sbjct 1351515 AACGAATGCTTCGAGCCATATACTTCCAACATCTACTCCCGTCGTGTCCTGGCTGGTGAG 1351574 Query 55604 TT 55605 || Sbjct 1351575 TT 1351576 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/139 (75%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATG-GAGAATCC 55845 || ||||| || || | ||||||||||||||| ||||| |||||| | || |||| || Sbjct 1351761 GCCGATCGGGGAGCCTTCATCGACCAGTCCCAATCTCTAAACATCCACTTGAAAGAACCC 1351820 Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905 || ||| ||| | | || |||||||| ||| ||||||| ||| ||||| || || Sbjct 1351821 ACCA-TGGGCAAAATCACATCCATGCACTTCGCCGGCTGGAAGATGGGCCTCAAAACCGG 1351879 Query 55906 TATGTACTATCTGCGGACC 55924 |||||||| || || ||| Sbjct 1351880 CATGTACTACCTCCGCACC 1351898 >seq2 Length=3515922 Score = 120 bits (132), Expect = 3e-22 Identities = 298/450 (66%), Gaps = 2/450 (0%) Strand=Plus/Plus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 || |||||||| || || ||||| || | |||||||| || ||||| || | |||| Sbjct 522697 CCGGTTCCGATGCCGTCGGCACCGTTGACAAGAATCATGGGGACGACTGGCGCATAGACT 522756 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCA-CTCGG 117270 || || || | | ||||||| || |||| |||| | | | || || || Sbjct 522757 TCTGGTTCGATTTTTTTGTCGTCGTCGGTATTGTACGTGAGAAGAGGCTCATCGGCTTGG 522816 Query 117271 ATCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGC 117330 | ||| | ||| ||| | |||| |||||| || || || ||||||| |||||||| Sbjct 522817 -TGGAAGAGCTTCCTGGCAAAAGGTGATAGGCGGGTAAAGATATAACGAGCGCTTGCAGA 522875 Query 117331 ATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTT 117390 || | || || || ||||| ||||| || ||||| | ||||| | ||| Sbjct 522876 GTCACTACCTCCCTGGTTTCGAGTACCAAATTGGCCTGATGGCTCAAGCAGGTTGATGTT 522935 Query 117391 GTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACC 117450 ||| | || || || ||||||||||| ||||| || |||||| ||||| || Sbjct 522936 GTTCGATCCGACGAAAGTTTGAGCCAAGCCAACAATTGTCTGTTGGAGAGAAGCCTCGCC 522995 Query 117451 ATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGA 117510 |||||||| || ||| | |||| |||| ||||| | ||| || ||||| || Sbjct 522996 GTGGTGATAAGCGGTCATTCCACCCACCAAGCCTGCCAGTTCAGCGACTTTCATATCCTT 523055 Query 117511 CGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATC 117570 | ||| || |||| ||| ||||| || || || ||||| | ||||| | || || Sbjct 523056 CCGCAGATTTCGTTTGAAGCATGCATACATGACTTTTCGCTGCCCGGGCTTTAAGCCGTC 523115 Query 117571 CGCCACGTGAGGGATCGAACGCTTGATGTC 117600 | ||| ||| || ||||| || |||| Sbjct 523116 GACGACGGAAGGAATGGAACGGATGTTGTC 523145 Score = 84.2 bits (92), Expect = 2e-11 Identities = 169/251 (67%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 152074 CGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTC 152133 || || ||||| || || || ||||| || ||||||| |||||| | || |||||| | Sbjct 522895 CGAGTACCAAATTGGCCTGATGGCTCAAGCAGGTTGATGTTGTTCGATCCGACGAAAGTT 522954 Query 152134 TGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGC 152193 |||||||| ||||| || || ||| || || ||||||||||| || ||| Sbjct 522955 TGAGCCAAGCCAACAATTGTCTGTTGGAGAGAAGCCTCGCCGTGGTGATAAGCGGTCATT 523014 Query 152194 TCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGA 152253 | | | | || |||| | || || ||||| ||| || ||| || |||| Sbjct 523015 CCACCCACCAAGCCTGCCAGTTCAGCGACTTTCATATCCTTCCGCAGATTTCGTTTGAAG 523074 Query 152254 CAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAA 152313 || || || || || || ||||| || || || ||||| || ||| |||||| ||| Sbjct 523075 CATGCATACATGACTTTTCGCTGCCCGGGCTTTAAGCCGTCGACGACGGAAGGAATGGAA 523134 Query 152314 CGCTTGATGTC 152324 || || |||| Sbjct 523135 CGGATGTTGTC 523145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215897397000