Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20verrucosa_20[genbank_20GCA_5F002099365.1_202017-04-18] 15 sequences; 35,456,005 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2 154 3e-32 seq8 132 1e-25 >seq2 Length=3515922 Score = 154 bits (170), Expect = 3e-32 Identities = 166/216 (77%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATC 210961 ||||| | ||| | || ||||| || |||||||| ||||| | ||||| | | ||||| Sbjct 2794709 AGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAATCGCTCAAGG-TGCGGCCATC 2794767 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 || ||||| || || |||||||| ||||| || || |||||||||| ||||||||||| Sbjct 2794768 CTCGAGCTGTTTACCGGCGAAGATGAGGCGCTGCTGATCAGGAGGAATGCCTTCCTTGTC 2794827 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGAT 211078 ||||||||| || || || ||||||||||| ||| ||||||||||| ||||| Sbjct 2794828 CTGGATCTTGCTCTTGACATTGTCGATGGTGTC---GCTCGACTCAACCTCGAGGGTGAT 2794884 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || | |||||| || || | |||||| Sbjct 2794885 GGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 2794920 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 |||||||| || || || || |||||||| || || || ||||| || || | || || Sbjct 2794244 CGAAGTCTGAGAACGAGATGGAGAGTGGATTCCTTCTGAATGTTGTAGTCTGAGAGAGTT 2794303 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || || || ||||||||||| |||||||| | ||||| ||||| || || | || Sbjct 2794304 CGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAATCGTTGCTGGTCCGGTGGGATGCCC 2794363 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 |||||||| |||||||| || ||||| || || || || || ||| ||||| || Sbjct 2794364 TCCTTGTCTTGGATCTTCGACTTGACGTTGTCAATCGTATCTGAAGATTCGACCTCTAGT 2794423 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||||||||| || || ||||| || || || | ||||||| Sbjct 2794424 GTGATCGTCTTGCCGGTCAGAGTTTTGACGAAGATCTGCATT 2794465 Score = 141 bits (156), Expect = 2e-28 Identities = 165/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| ||||| || || | || | ||| ||| || || ||||| || || | || || Sbjct 2794015 ACGGAGTCTCAGCACCAAATGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGACAGCGT 2794074 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || ||||||||||| |||||||| || | || ||||| || || | || Sbjct 2794075 TCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGTCTCTGCTGGTCGGGTGGGATGCC 2794134 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||| ||||||||| ||| || || || |||||||| ||||| || || || || Sbjct 2794135 CTCCTTGTCTTGGATCTTTGATTTGACATTGTCAATGGTGTCTGAGCTCTCGACTTCCAG 2794194 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || |||||||| ||||| | |||||| ||||| | |||||| Sbjct 2794195 CGTAATCGTCTTGCCCGTCAAAGTCTTGACAAAGATTTGCATT 2794237 Score = 138 bits (152), Expect = 3e-27 Identities = 167/226 (74%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| || || ||||| || ||||| |||||||| || || | ||||| Sbjct 2794471 ACGAAGACGGAGGACGAGATGGAGAGTCGATTCTTTCTGGATGTTGTAGTCGGAGAGGGT 2794530 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || ||||| || ||||| || || ||||| || ||||| || || || || | || Sbjct 2794531 GCGGCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAGACGTTGCTGATCCGGGGGGATGCC 2794590 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTC 211069 ||||||||| || ||||| || ||||| |||||||| || ||| |||||||| Sbjct 2794591 TTCCTTGTCTTGAATCTTGCTCTTGACGTTGTCGATGGTATC---GCTCGACTCAACCTC 2794647 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || ||||| || || |||||||| ||||| | |||||| Sbjct 2794648 AAGCGTAATGGTCTTGCCAGTAAGAGTCTTCACAAAAATTTGCATT 2794693 >seq8 Length=1658097 Score = 132 bits (146), Expect = 1e-25 Identities = 201/282 (71%), Gaps = 8/282 (3%) Strand=Plus/Minus Query 178088 CCAAAGTTCTTTTGGTTGCTCTTTCT---GCAAATGGCATCTTTGTACGCAATGAAGGGC 178144 || |||||||| ||||||||||| || ||| |||||| ||||| ||| |||| Sbjct 1350934 CCCAAGTTCTTCTGGTTGCTCTTCCTATTGCA---GGCATCCTTGTAGAGCATGTAGGG- 1350879 Query 178145 ATTCCCAC-CTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGT 178203 | ||||| ||||| |||||| | ||||| || ||| |||| |||||| ||| || Sbjct 1350878 AGTCCCAGTCTCAGTCTGAGCCTCAAGAATCGCATACCACAGCTTCTGGGCCTTGACGGT 1350819 Query 178204 CTTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATA 178263 || | | || || || || || | | ||||||||||| ||| || ||||| Sbjct 1350818 CTGACGGCCACGGCCCTCTTTTTCATATCTCTCGTAGAGCTCCTGGAACTCGTCGCCATA 1350759 Query 178264 GACATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTT 178323 |||||| | ||||| |||||||||| |||||||| ||| |||||| || | || Sbjct 1350758 GACATCGGCCAGACCTGGAGCCTCATGAGGGCAGAAAAGAGTCCACTCCTGGTTCTTCTC 1350699 Query 178324 CACTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365 || || | |||||| | ||||| |||||| || |||||||| Sbjct 1350698 GACACGCTCCATGAACAAGTCAGGGGTCCACATAGCATAGAA 1350657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151777225475