Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq14 141 2e-28 >seq14 Length=1191321 Score = 141 bits (156), Expect = 2e-28 Identities = 321/473 (68%), Gaps = 16/473 (3%) Strand=Plus/Plus Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 || ||| | || |||||||||| | ||||| ||||| || | ||| | | ||| | Sbjct 900702 TTCGCCAACCGCCTCGTCGCCTTCGCTGCCGTTGAGGGTAT-CT-TCTTCAGTG-GTTCC 900758 Query 230233 TGCGC---CATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 230289 | ||| |||||| |||||| || ||| | ||||| || ||| | || ||| Sbjct 900759 TTCGCGTCCATCTTCTGGCTGAAAAAGCGTGGTCTCATGCCCGGTCTCACATTCTCCAAC 900818 Query 230290 GAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAG-TTCGGCGAGCTTAT-GTATTCAA 230347 ||| ||||| ||| || ||||| | || |||| || || |||| | || ||| Sbjct 900819 GAGCTCATCTCTCGTGATGAGGGCATGCAC--ACAGATTTTGCCTGCTTGTTGTTTTCT- 900875 Query 230348 AGCTCCAGAACAAGCTACCATTC---GAGACGGTCAAACAAATCATTACAGAAGCAGTTG 230404 |||| ||||| | || | ||| | ||| | ||||| || || || || Sbjct 900876 --CTCCTCAACAACCGTCCCAGCAAGGAGGCTGTCGAGGCTATCATCACCGAGGCTGTCA 900933 Query 230405 AAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTG 230464 || ||| |||||||| | | |||||| |||| ||| || | ||||||||||| Sbjct 900934 CAATCGAGCAGGAGTTCCTGTCAGACGCTCTTCCCTGTGCTCTGCTCGGCATGAACGCCA 900993 Query 230465 AACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACG 230524 ||| ||| | ||||||||||| ||||| || ||||| | | | || ||||| || Sbjct 900994 CACTCATGTGTCAGTACATCGAGTTCGTTGCTGACCGTCTGCTCTTGGCCCTTGGCAACC 901053 Query 230525 AGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGA 230584 || |||||| ||| |||||||| | || |||||| ||||||||| || | Sbjct 901054 CCAAGTACTACAACGCTACCAACCCCTTCGATTTCATGGAGAACATTTCGCTCGCCGGCA 901113 Query 230585 AGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 ||||||| |||||||| ||||||||| ||||||| |||| | | ||||| ||| Sbjct 901114 AGACCAATTTCTTCGAGAAGCGTGTCGGTGACTACCAGAAGGCCGGTGTCATG 901166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057821045365340