Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq9 129 7e-25 seq14 96.9 4e-15 >seq9 Length=1465676 Score = 129 bits (142), Expect = 7e-25 Identities = 397/604 (66%), Gaps = 10/604 (2%) Strand=Plus/Minus Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040 ||||| || || | || ||||| | | |||||| |||| | || || || | ||| Sbjct 1036985 CCAGGGCACTCGTTGGGGCACATGAGTGTCCACTCGCCGTTCTGCTGGACACGCTCCATG 1036926 Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100 |||||||| || ||||| ||||| || ||||| | || | | ||||| || || Sbjct 1036925 AAGAGATCGGGGATCCACAGAGCGTAGAAGAGATCGCGGGCGCGAACCTCCTCCTTGCCG 1036866 Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160 ||||| | || |||||||| | | | |||| ||||| || || | ||| ||| Sbjct 1036865 TGGTTCTTCCTGAGGTCGAGGAAGCCGAAGACGTCAGCGTGCCATGGCTCGAGGTAGATG 1036806 Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220 | | | || || || ||||| || ||||| || | ||| | || ||||| || || Sbjct 1036805 GCGAAGGCACCGGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGGGCAGTGTTGTTGTAG 1036746 Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280 || | | ||| || || | ||| || |||| || ||||| || ||| ||| ||| Sbjct 1036745 ACACGGAGCATGGGGATGAGACCGTTCGATGTTCCGTTGGTTCCTCCGATGTAGGAGCCA 1036686 Query 54281 CTGGCACGAATATTACTAA--TTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATG 54338 |||||||||| | |||| | || || || || || | || ||||| || | Sbjct 1036685 GTGGCACGAATGCGGTGGACGTTGA--GGCCAATTCCGCCAGCAGTCTTGGAGATCAACG 1036628 Query 54339 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 54398 |||| || | || || ||||||||||| || || || ||| |||||| | || | Sbjct 1036627 CGCAGGTCTTGAGTGTGTCGTAGATGCCCTCGATGCTGTCCTCCTTCATGTCGATGAGGA 1036568 Query 54399 AACAGCTAGACATTTGGTGACGA-CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 54457 | ||| ||||| | | | ||| || || || || || | || || || ||||| Sbjct 1036567 AGCAGGACGACATCT-GCGGCGAGGGTGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGT 1036509 Query 54458 GTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCC-CATT 54515 || || | || | || | |||| | ||| |||||||| || || || ||| | | Sbjct 1036508 GTGAAGTACTTCTGCGACATGTAG-TCGTATGTCTCGATGGCCTTCTCGATGTCCTCCAT 1036450 Query 54516 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 54575 | || || || || || |||||||| | ||||||||| || | || ||| |||| || Sbjct 1036449 G-TGGATGCCGACGGCAACACGCATGAGCATGTGCTGCGGGCGCTCGGCGACCTTGCCGT 1036391 Query 54576 TTAT 54579 | || Sbjct 1036390 TGAT 1036387 >seq14 Length=1191321 Score = 96.9 bits (106), Expect = 4e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 24125 AAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGA 24184 ||||| ||| || || ||||| ||| | ||||| || | | || | |||||||| Sbjct 900872 AAACAACAAGCAGGCAAAATCTGTGTGCATGCCCTCATCACGAGAGATGAGCTCGTTGGA 900813 Query 24185 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCC 24244 || ||||| |||||||| || ||||||||||| ||||| || |||||||| || || || Sbjct 900812 GAATGTGAGACCGGGCATGAGACCACGCTTTTTCAGCCAGAAGATGGACGCGAAGGAACC 900753 Query 24245 AGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 24277 | ||||| || || || || || || ||||| Sbjct 900752 ACTGAAGAAGATACCCTCAACGGCAGCGAAGGC 900720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593719982108640