Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq20 100 2e-16 seq4 100 2e-16 >seq20 Length=976498 Score = 100 bits (110), Expect = 2e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| || | |||||||||||| || ||||| ||||| | Sbjct 715757 CCACCACGCAGGCGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 715816 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | ||||| ||||| ||||| || | || || | |||||||||| ||| Sbjct 715817 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGA 715876 Query 21069 ACGCCTTCCTTGTCGGCG 21086 | ||| |||||||| ||| Sbjct 715877 ATGCCCTCCTTGTCTGCG 715894 >seq4 Length=1699079 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 ||| || || || | ||||||| |||| || |||||||| || ||||||||||| | Sbjct 983001 TCCACCACGAAGACGAAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTATAGTCGGA 982942 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 || || | |||| |||| ||| ||||| ||| | || || | |||||||| || Sbjct 982941 AAGCGTGCGACCGTCTTCCAACTGCTTGCCGGCAAAGATGAGGCGTTGCTGGTCAGGAGG 982882 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | ||| ||||| || ||||| || || | | ||| || || | || ||| Sbjct 982881 GATGCCCTCCTTATCCTGAATCTTAGACTTTACGTTGTCGATCGTGTCGCTGGACTCGAC 982822 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || |||||||||||||| | || |||||||| |||||||| Sbjct 982821 CTCCAATGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAAATTTGCAT 982774 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| || | ||||| ||||| ||||| || ||||||| Sbjct 982772 CCACCACGGAGACGGAGCACCAAGTGGAGTGTGGATTCCTTCTGAATATTGTAGTCCGAG 982713 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | ||||| ||||| || || || | ||||| | ||||| || ||| Sbjct 982712 AGTGTGCGACCATCCTCTAGCTGCTTACCAGCGAAGATAAGGCGTTGCTGATCAGGGGGG 982653 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| ||||| || || | | ||| ||| || | |||| Sbjct 982652 ATGCCTTCCTTGTCCTGAATCTTGCTCTTGACATTGTCGATAGTGTCGGATGACTCCACC 982593 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| || ||||||||||| | || ||||| || || ||||| Sbjct 982592 TCAAGGGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 982546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422258078110088