Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq14 205 1e-47 seq4 140 3e-28 seq20 127 2e-24 seq13 105 7e-18 >seq14 Length=1191321 Score = 205 bits (226), Expect = 1e-47 Identities = 215/282 (76%), Gaps = 3/282 (1%) Strand=Plus/Plus Query 116639 TGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCC 116698 |||| |||||||| ||||||||||| || |||||||||| |||||| | || || ||| Sbjct 900259 TGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCTGAGGAGATCGATCTCTCC 900318 Query 116699 AAGGACACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAAGCAC 116755 |||||| ||||||| | |||| | || ||| |||||||| |||||| ||| Sbjct 900319 AAGGACCTTCACGACTGGAACAGGCGCCTCAATGACGACGAGCGCTTCTTCATCTCCCAC 900378 Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTC 116815 || || ||||| ||||||||| ||| ||||| ||||||||||| || |||||||| ||| Sbjct 900379 GTTCTCGCCTTCTTCGCCGCCTCCGATGGCATTGTCAACGAGAACCTTGTCGAGCGCTTC 900438 Query 116816 GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAG 116875 | ||||| || | ||||||| || |||||||||||||| |||||| |||||| Sbjct 900439 TCCGGCGAGGTTCAAATCCCCGAGGCCCGTTGCTTCTACGGCTTCCAGATCATGATGGAG 900498 Query 116876 AACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 ||||| ||| | || | || || |||||||||||| ||| Sbjct 900499 AACGTCCACGCCGAGACATACTCTCTCCTCATCGACACATAC 900540 Score = 165 bits (182), Expect = 8e-36 Identities = 303/439 (69%), Gaps = 4/439 (1%) Strand=Plus/Plus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 |||||||||| ||||| || || |||||| | | || | || | |||| | | |||| Sbjct 900655 AGAAGGCCGACTGGGCTCTCCGATGGATCTCTGACAAGAACTCCACATTCGCCAACCGCC 900714 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 | || |||||||| ||||| ||||| ||||||| || ||||| |||| || | Sbjct 900715 TCGTCGCCTTCGCTGCCGTTGAGGGTATCTTCTTCAGTGGTTCCTTCGCGTCCATCTTCT 900774 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| || || || || ||||||||||| || || ||| ||||||||||||||| | | Sbjct 900775 GGCTGAAAAAGCGTGGTCTCATGCCCGGTCTCACATTCTCCAACGAGCTCATCTCTCGTG 900834 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221 | ||||| |||| || |||||||| ||| |||| | | | || || | Sbjct 900835 ATGAGGGCATGCACACAGATTTTGCCTGCTTGTTGTTTTCTCTCCTCAACAACCGTCCCA 900894 Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281 || || | ||| || ||| ||||||| || ||| | ||||||||| ||||| Sbjct 900895 GCAAGGAGGCTGTCGAGGCTATCATCACCGAGGCTGTCACAATCGAGCAGGAGTTCCTGT 900954 Query 117282 CCGAAGCGC-TGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACAT 117339 | || || | | || |||| |||||| || | || || | || |||| || ||||| Sbjct 900955 CAGACGCTCTTCCCTGTGC-TCTGCTCGGCATGAA-CGCCACACTCATGTGTCAGTACAT 901012 Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCC 117399 ||||||||| || ||| | ||||| | | || | | | ||||| |||||||| | | Sbjct 901013 CGAGTTCGTTGCTGACCGTCTGCTCTTGGCCCTTGGCAACCCCAAGTACTACAACGCTAC 901072 Query 117400 CAACCCGCTGGACTTTATG 117418 |||||| | || || ||| Sbjct 901073 CAACCCCTTCGATTTCATG 901091 >seq4 Length=1699079 Score = 140 bits (154), Expect = 3e-28 Identities = 155/204 (76%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || ||||| ||||| |||||||| | || ||||| ||| | Sbjct 982774 ATGCAAATTTTTGTCAAGACCCTCACCGGCAAGACCATCACATTGGAGGTCGAGTCCAGC 982833 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | ||| || |||| || || ||||||||||| | ||||| Sbjct 982834 GACACGATCGACAACG-TAAAGTCTAAGATTCAGGATAAGGAGGGCATCCCTCCTGACCA 982892 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| ||||||| || ||||| ||| |||| |||| ||||| || |||||| || Sbjct 982893 GCAACGCCTCATCTTTGCCGGCAAGCAGTTGGAAGACGGTCGCACGCTTTCCGACTATAA 982952 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| | |||||||| Sbjct 982953 CATCCAGAAGGAGTCGACGCTGCA 982976 Score = 113 bits (124), Expect = 5e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 || ||||| |||||||| |||| ||||| || |||| | | | | |||| ||||| Sbjct 982342 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCCGATACCATTGACAACG-TCAAGTC 982400 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || || | ||||| ||||| ||||| | || ||||| || || || | ||| ||||| Sbjct 982401 GAAGATCCAAGACAAGGAGGGTATCCCTCCAGATCAGCAGCGTCTGATTTTCGCTGGCAA 982460 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 || || || || | || ||| | |||||||||||||||||||||| |||| ||||| Sbjct 982461 GCAACTTGAGGATGGCCGTACCTTGTCCGACTACAACATCCAGAAGGAGTCCACACTGCA 982520 Query 40893 TCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| || ||||| || | || || Sbjct 982521 TCTCGTCCTGCGCCTGCGCGGTGG 982544 >seq20 Length=976498 Score = 127 bits (140), Expect = 2e-24 Identities = 111/138 (80%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||| ||| |||||||||| || ||||||| ||| ||||| ||||| || Sbjct 715890 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAG 715831 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | ||||||||| |||||||||||||||||||||| |||| || || || ||| | Sbjct 715830 GATGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACTCTCCACCTGGTGCTC 715771 Query 40903 CGCTTGAGGGGCGGCGGC 40920 ||| || | || || ||| Sbjct 715770 CGCCTGCGTGGTGGTGGC 715753 >seq13 Length=1247346 Score = 105 bits (116), Expect = 7e-18 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||| ||| |||||||||| || | |||| || ||||| ||||| || Sbjct 565480 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGCTTGATCTTTGCCGGCAAGCAGCTCGAG 565539 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||| ||||||||| |||||||||||||||||||||| | || || || || || Sbjct 565540 GACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCGACTCTCCACCTGGT 565595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217796027680