Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq4 118 9e-22 seq20 107 2e-18 >seq4 Length=1699079 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||||| ||| || || || ||||| ||||| || | ||||| |||||| Sbjct 982755 CACCAAGTGGAGTGTGGATTCCTTCTGAATATTGTAGTCCGAGAGTGTGCGACCATCCTC 982696 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || |||||| |||| || || |||||||| || || ||||| |||||||| Sbjct 982695 TAGCTGCTTACCAGCGAAGATAAGGCGTTGCTGATCAGGGGGGATGCCTTCCTTGTCCTG 982636 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | |||| ||||| | ||| ||||| | ||| | ||| || Sbjct 982635 AATCTTGCTCTTGACATTGTCGATAGTGTCGGATGACTCCACCTCAAGGGTGATCGTCTT 982576 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| || || || || || |||||||| Sbjct 982575 GCCGGTGAGGGTCTTGACGAAGATCTGCAT 982546 Score = 104 bits (114), Expect = 2e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| ||||| | | || || | || | ||| ||||| || || |||||||| ||| Sbjct 982546 TACCACCGCGCAGGCGCAGGACGAGATGCAGTGTGGACTCCTTCTGGATGTTGTAGTCGG 982487 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || || |||||| || || || |||||| | || |||||||||||||| |||| Sbjct 982486 ACAAGGTACGGCCATCCTCAAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGATCTGGAG 982427 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || |||||||||||| || || || || | || | ||| || | | ||||| Sbjct 982426 GGATACCCTCCTTGTCTTGGATCTTCGACTTGACGTTGTCAATGGTATCGGAGGACTCGA 982367 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCA 118716 |||||| || | || |||||||||| Sbjct 982366 CCTCGAGAGTGATGGTCTTGCCGGTCA 982340 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || ||||| || || ||||| || ||| | ||||| || || Sbjct 982983 CACCAAGTGCAGCGTCGACTCCTTCTGGATGTTATAGTCGGAAAGCGTGCGACCGTCTTC 982924 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||| || || || ||||||| || ||||| || ||||| ||||||||||| || Sbjct 982923 CAACTGCTTGCCGGCAAAGATGAGGCGTTGCTGGTCAGGAGGGATGCCCTCCTTATCCTG 982864 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | |||| ||||| || ||||||||| | || | || || Sbjct 982863 AATCTTAGACTTTACGTTGTCGATCGTGTCGCTGGACTCGACCTCCAATGTGATGGTCTT 982804 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| || || || |||||||| ||||| Sbjct 982803 GCCGGTGAGGGTCTTGACAAAAATTTGCAT 982774 Score = 96.9 bits (106), Expect = 3e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || ||||||||||||||| || ||| || |||||||||||| || || Sbjct 982230 GTGGACTCCTTCTGAATGTTGTAATCGGACAAAGTACGACCATCCTCGAGCTGCTTGCCG 982171 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | |||||||| || || || ||||| |||||||| ||| || || Sbjct 982170 GCGAAGATCAAGCGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGAATCTTGCTCTTG 982111 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || | |||| ||||| | ||| ||||| | ||| | ||| || ||||| Sbjct 982110 ACATTGTCGATAGTGTCGGATGACTCCACCTCAAGGGTGATCGTCTTACCGGT 982058 >seq20 Length=976498 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||||| || ||||| || || |||||||| ||| | ||||| |||||| Sbjct 715774 CACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTC 715833 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647 |||||| || || ||| |||||||||||||||| || || || |||||||||||||||| Sbjct 715834 GAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCTG 715892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433829247366856