Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq4 127 1e-24 seq20 98.7 6e-16 >seq4 Length=1699079 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | ||||||| ||| | || || ||||| ||||| |||||||| Sbjct 983001 TCCACCACGAAGACGAAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTATAGTCGGA 982942 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 ||| || |||| |||||||||||||| || || ||||| || |||||||| || Sbjct 982941 AAGCGTGCGACCGTCTTCCAACTGCTTGCCGGCAAAGATGAGGCGTTGCTGGTCAGGAGG 982882 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||| || ||||| ||||| | | | |||| ||| | || ||||| Sbjct 982881 GATGCCCTCCTTATCCTGAATCTTAGACTTTACGTTGTCGATCGTGTCGCTGGACTCGAC 982822 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||||||||| || || ||||| || ||||| Sbjct 982821 CTCCAATGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAAATTTGCAT 982774 Score = 96.9 bits (106), Expect = 2e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | ||| || || || | || || ||||| ||||||||||||||| Sbjct 982544 CCACCGCGCAGGCGCAGGACGAGATGCAGTGTGGACTCCTTCTGGATGTTGTAGTCGGAC 982485 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | |||| | || || | |||||||| |||||||| || |||||||| || || Sbjct 982484 AAGGTACGGCCATCCTCAAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGATCTGGAGGG 982425 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | | | | || | ||||| || ||||| Sbjct 982424 ATACCCTCCTTGTCTTGGATCTTCGACTTGACGTTGTCAATGGTATCGGAGGACTCGACC 982365 Query 34343 TCCACCGTGATGGTTTTGCCGGT 34365 || | |||||||| |||||||| Sbjct 982364 TCGAGAGTGATGGTCTTGCCGGT 982342 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | || ||| ||||| || |||||||| || || || | || Sbjct 982757 AGCACCAAGTGGAGTGTGGATTCCTTCTGAATATTGTAGTCCGAGAGTGTGCGACCATCC 982698 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || ||||| || || || ||||| || ||| | || |||||||| Sbjct 982697 TCTAGCTGCTTACCAGCGAAGATAAGGCGTTGCTGATCAGGGGGGATGCCTTCCTTGTCC 982638 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | | || | |||| || || || || | ||||| || Sbjct 982637 TGAATCTTGCTCTTGACATTGTCGATAGTGTCGGATGACTCCACCTCAAGGGTGATCGTC 982578 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||||||||| || || || ||||||||||| Sbjct 982577 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 982546 >seq20 Length=976498 Score = 98.7 bits (108), Expect = 6e-16 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||||||||| | ||| || ||||| |||||||||||||| Sbjct 715757 CCACCACGCAGGCGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 715816 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||||||| ||||| ||||| ||||||||||| ||| Sbjct 715817 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGA 715876 Query 34283 ACGCTCTCCTTGTCGGC 34299 | || ||||||||| || Sbjct 715877 ATGCCCTCCTTGTCTGC 715893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071141638080