Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq9 360 2e-94 seq4 96.9 3e-15 >seq9 Length=1465676 Score = 360 bits (398), Expect = 2e-94 Identities = 653/949 (69%), Gaps = 10/949 (1%) Strand=Plus/Minus Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086 ||||| || ||||| || || ||||| || | |||||||| | ||||| || || Sbjct 1037255 GAGGCCAGGTTGCAGACAGCGACCTCATCGGGAGCAGTGTACTCGATGATTTCAGTGCAC 1037196 Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146 || ||| | || || || | || |||||||||| || | ||| | |||| Sbjct 1037195 AGGTTGGAGCTGCGGATGGTACCAAGGTTCTTCTGGTTGCTCTTCCTGTTGGCAGCATCC 1037136 Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206 |||||||||||| | || | || |||||| ||| | ||||| || || ||| | Sbjct 1037135 TTGTAGAGCATGAAGGGGTTACCGGTCTCGGTCTGAGCCTCGAGAATGGCGTACCAGAGC 1037076 Query 23207 GTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACGC 23265 ||||||| | ||| ||| |||| ||| ||| ||| ||||||||| | ||||| || Sbjct 1037075 TTCTGAGCACGGACA-GTCTCACGACCCTTGCCCGCTTTCTCGTACTTCTCGTACAGGGC 1037017 Query 23266 GTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACT 23325 | | || ||| ||||||| ||| || ||||| || | | | || |||||||| | Sbjct 1037016 GACGAACTCGTCACCGTAGACGTCAGCGAGGCCAGGGCACTCGTTGGGGCACATGAGTGT 1036957 Query 23326 CCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAA 23385 |||| || | | || || ||| || ||||| || ||||| ||||||||||| Sbjct 1036956 CCACTCGCCGTTCTGCTGGACACGCTCCATGAAGAGATCGGGGATCCACAGAGCGTAGAA 1036897 Query 23386 CAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAA 23445 || ||||||||||| |||||||| |||||| |||||| | | || | ||| | || Sbjct 1036896 GAGATCGCGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTCCTGAGGTCGAGGAAGCCGAA 1036837 Query 23446 CACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCC 23505 ||||| || ||||| ||||||||||| | ||| || || || || | ||| ||||| || Sbjct 1036836 GACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCGGGGCGCTTGTTGCCACC 1036777 Query 23506 CTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGA 23565 ||| |||||||| ||||| ||||||||||| || | ||||| || | ||||||||| || Sbjct 1036776 CTGGTCGACGTAGCGGGCAGTGTTGTTGTAGACACGGAGCATGGGGATGAGACCGTTCGA 1036717 Query 23566 CGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACC 23625 | ||| || | | || || | || |||| | ||| |||| || || Sbjct 1036716 TGTTCCGTTGGTTCCTCCGATGTAGGAGCCAGTGGCACGAATGCGGTGGACGTTGAGGCC 1036657 Query 23626 TATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTC 23685 || || || | | || || |||| |||||| || || ||||||||||||||||| Sbjct 1036656 AATTCCGCCAGCAGTCTTGGAGATCAACGCGCAGGTCTTGAGTGTGTCGTAGATGCCCTC 1036597 Query 23686 GATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGC 23745 |||||||||||| || | ||| | ||| || || ||||| |||| ||| || | Sbjct 1036596 GATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGACGACATCTGCGGCGAGGGTGTGCC 1036537 Query 23746 GGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACAT-TAGATTGTACG 23804 ||| ||| || ||||| |||||| || ||||| | |||||| ||| | ||| | Sbjct 1036536 GGCGTTGAAGAGCGTCGGCGAGGCGTGTGTGAAGTACTTCTGCGACATGTAG-TCGTATG 1036478 Query 23805 TGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGT 23864 | |||||||| || |||||||| ||| || |||| ||| || ||||| | ||||| Sbjct 1036477 TCTCGATGGCCTTCTCGATGTCCTCCATGTGGATGCCGACGGCAACACGCATGAGCATGT 1036418 Query 23865 ATTGAGGTCTCT---CGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCG 23921 || || | || ||||| | |||||| || || ||| ||||| || | | || Sbjct 1036417 GCTGCGGGCGCTCGGCGACCTT---GCCGTTGATGCGGAGCAGGTATGAGCGCTCGAGCG 1036361 Query 23922 TTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGC 23970 | || || || || | | ||||| ||||| || |||| || ||||| Sbjct 1036360 TCTTGAAGCCGAAGAACTGGTAGTTGAAGTCGCGGTCGTAGACGATGGC 1036312 Score = 158 bits (174), Expect = 1e-33 Identities = 336/499 (67%), Gaps = 2/499 (0%) Strand=Plus/Minus Query 22143 TGGTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCG 22202 |||| || || || |||||||| ||||| ||||| | |||||| | || || || | Sbjct 1038139 TGGTACGGAGGTAGTACATGCCGGTCTTGAGACCGAGCTTCCAGCCAGCGAAGTGCATGG 1038080 Query 22203 ACGTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGA 22262 | || | || || | | ||| | ||||| | || | |||||| |||||||| Sbjct 1038079 ATGTGATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTCAGGGACTGAGACTGATCGA 1038020 Query 22263 TAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGG 22322 | || || || || || |||||||| | || | |||||| ||| || ||||| |||| Sbjct 1038019 TGAAGGCACCACGGTCAGCGGCCATCTGGATGATGGTACGCTGCGAGATCTCCCAGACGG 1037960 Query 22323 TCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTAT 22382 |||||||||| | ||||||| || || ||| | ||| | ||| || | Sbjct 1037959 TCTTGTACAGAGTCTTGATCTCGTCAGGGATGTTGGGGATGCGCTGAATGGAACCACCCT 1037900 Query 22383 TGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGA 22442 ||||| || || || | ||| |||| | ||| ||| || || || |||| Sbjct 1037899 CAGCGATGATGCGGTTCTTCATGTTCTCGGTCCAGAGACCCATGTCGACCAGGTCCTTGA 1037840 Query 22443 CCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAG-ACGCGGCGTTGGTAAATGTTG 22501 || |||| || || || ||||| || | |||| |||||||| ||| ||||| Sbjct 1037839 GCAACCAGGGGTTGACAACCTGGAACTCACCAG-CAAGCACGCGGCGAGAGTAGATGTTC 1037781 Query 22502 GATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGC 22561 |||||| | || ||||| | || ||||| || || ||||| | ||| || || || ||| Sbjct 1037780 GATGTGTAGGGCTCGAAGCACTCGTTGTTGCCGAGAATCTGGGAGGTGGAGGCAGTAGGC 1037721 Query 22562 ATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATC 22621 || ||||| | ||||||||||| | | ||||||| | ||| || ||| ||| | Sbjct 1037720 ATGGGCGCGACGAGTAGCGAGTTGCGGACACCGTGCTGAGCAATCTTCGCCTTCAGCGCC 1037661 Query 22622 GACCAGTCCCACAGATCGG 22640 ||||||||| ||||||| Sbjct 1037660 TCCCAGTCCCAAAGATCGG 1037642 >seq4 Length=1699079 Score = 96.9 bits (106), Expect = 3e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 31217 ACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAG 31276 || || || ||||||||| | || || || | ||||||| | |||| | ||||| Sbjct 982058 ACCGGTAAGACGATCACCCTTGAGGTGGAGTCATCCGACACTATCGACAATGTCAAGAGC 982117 Query 31277 AGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAA 31336 | || ||||||||||||| | || || ||||||||||| | || ||||| ||||| Sbjct 982118 AAGATTCAGGACAAGGAAGGCATCCCCCCAGACCAGCAGCGCTTGATCTTCGCCGGCAAG 982177 Query 31337 CAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCAT 31396 ||| | || || | ||| || |||||| |||||||| || || || |||||||| Sbjct 982178 CAGCTCGAGGATGGTCGTACTTTGTCCGATTACAACATTCAGAAGGAGTCCACTCTTCAC 982237 Query 31397 CTGGTACT 31404 || || || Sbjct 982238 CTCGTCCT 982245 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| ||||||||| | || || || | ||| Sbjct 982546 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACGATCACCCTTGAGGTGGAGTCATCC 982605 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| | ||||| | || ||||||||||||| | || || || ||| Sbjct 982606 GACACTATCGACAATGTCAAGAGCAAGATTCAGGACAAGGAAGGCATCCCCCCTGATCAG 982665 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 || || || || |||||||| || ||| | || || Sbjct 982666 CAACGCCTTATCTTCGCTGGTAAGCAGCTAGAGGA 982700 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| || || ||||| || ||||| | || || || | | Sbjct 982774 ATGCAAATTTTTGTCAAGACCCTCACCGGCAAGACCATCACATTGGAGGTCGAGTCCAGC 982833 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || | || ||| ||||| ||| | || || |||||| Sbjct 982834 GACACGATCGACAACGTAAAGTCTAAGATTCAGGATAAGGAGGGCATCCCTCCTGACCAG 982893 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || || || || || ||||| |||||||||||| | || | ||| |||||| Sbjct 982894 CAACGCCTCATCTTTGCCGGCAAGCAGTTGGAAGACGGTCGCACGCTTTCCGACTATAAC 982953 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || || || || ||||| || || |||| ||| Sbjct 982954 ATCCAGAAGGAGTCGACGCTGCACTTGGTGCTT 982986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765185286560