Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq9 127 3e-24 seq14 96.9 5e-15 >seq9 Length=1465676 Score = 127 bits (140), Expect = 3e-24 Identities = 414/633 (65%), Gaps = 10/633 (2%) Strand=Plus/Minus Query 65983 CGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACC 66042 |||||||||| || | || | | | ||||| || || | || ||||| | | || Sbjct 1037014 CGAACTCGTCACCGTAGACGTCAGCGAGGCCAGGGCACTCGTTGGGGCACATGAGTGTCC 1036955 Query 66043 ACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATA 66102 |||| |||| | || || || | ||| |||||||| || ||||| ||||| || | Sbjct 1036954 ACTCGCCGTTCTGCTGGACACGCTCCATGAAGAGATCGGGGATCCACAGAGCGTAGAAGA 1036895 Query 66103 AATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAA 66162 ||| | || | | ||||| || || ||||| | || |||||||| | | | Sbjct 1036894 GATCGCGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTCCTGAGGTCGAGGAAGCCGAAGA 1036835 Query 66163 TATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCT 66222 ||| ||||| || || | ||| ||||| | | || || || ||||| || |||| Sbjct 1036834 CGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCGGGGCGCTTGTTGCCACCCT 1036775 Query 66223 GATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATG 66282 | || | ||| | || ||||| || || || | | ||| || || | ||| || |||| Sbjct 1036774 GGTCGACGTAGCGGGCAGTGTTGTTGTAGACACGGAGCATGGGGATGAGACCGTTCGATG 1036715 Query 66283 TACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAA--TTGATAGACC 66340 | || ||||| || ||| ||| ||| | |||||||| | |||| | || Sbjct 1036714 TTCCGTTGGTTCCTCCGATGTAGGAGCCAGTGGCACGAATGCGGTGGACGTTGA--GGCC 1036657 Query 66341 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 66400 ||||| || || | || ||||| || ||||| || | || || ||||||||||| Sbjct 1036656 AATTCCGCCAGCAGTCTTGGAGATCAACGCGCAGGTCTTGAGTGTGTCGTAGATGCCCTC 1036597 Query 66401 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA-CTAGTTC 66459 || || || ||| |||||| | || || ||| ||||| | | | ||| || | Sbjct 1036596 GATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGACGACATCT-GCGGCGAGGGTGTGC 1036538 Query 66460 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTGTAC 66518 | || || || | || || || ||||| || || | || | || | |||| | ||| Sbjct 1036537 CGGCGTTGAAGAGCGTCGGCGAGGCGTGTGTGAAGTACTTCTGCGACATGTAG-TCGTAT 1036479 Query 66519 GTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAACAT 66577 ||||| || || || || ||| | || || || || || || |||||||| | ||| Sbjct 1036478 GTCTCGATGGCCTTCTCGATGTCCTCCATG-TGGATGCCGACGGCAACACGCATGAGCAT 1036420 Query 66578 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 66610 |||||| || | || ||| |||| ||| || Sbjct 1036419 GTGCTGCGGGCGCTCGGCGACCTTGCCGTTGAT 1036387 >seq14 Length=1191321 Score = 96.9 bits (106), Expect = 5e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 36148 AAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGA 36207 ||||| ||| || || ||||| ||| | ||||| || | | || | |||||||| Sbjct 900872 AAACAACAAGCAGGCAAAATCTGTGTGCATGCCCTCATCACGAGAGATGAGCTCGTTGGA 900813 Query 36208 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCC 36267 || ||||| |||||||| || ||||||||||| ||||| || |||||||| || || || Sbjct 900812 GAATGTGAGACCGGGCATGAGACCACGCTTTTTCAGCCAGAAGATGGACGCGAAGGAACC 900753 Query 36268 AGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300 | ||||| || || || || || || ||||| Sbjct 900752 ACTGAAGAAGATACCCTCAACGGCAGCGAAGGC 900720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658171006479120