Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq4 104 2e-17 seq14 98.7 1e-15 >seq4 Length=1699079 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | || || || || ||||| || || || Sbjct 982772 CCACCACGGAGACGGAGCACCAAGTGGAGTGTGGATTCCTTCTGAATATTGTAGTCCGAG 982713 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| || || ||||| |||||||| |||| || ||||||||||| || || Sbjct 982712 AGTGTGCGACCATCCTCTAGCTGCTTACCAGCGAAGATAAGGCGTTGCTGATCAGGGGGG 982653 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| ||| | || | || | | || | ||||||| | |||||| Sbjct 982652 ATGCCTTCCTTGTC-CTGAATCTTGCTCTTGACATTGTCGATAGTGTCGGATGACTCCAC 982594 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| ||| | |||||||||||| | || || ||||| || |||||| Sbjct 982593 CTCAAGGGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATA 982545 Score = 104 bits (114), Expect = 2e-17 Identities = 171/243 (70%), Gaps = 3/243 (1%) Strand=Plus/Minus Query 139524 TACCGCGGACATGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAA 139583 |||||| || || || || || | ||| | || ||||| | ||| ||||| || || | Sbjct 983013 TACCGCCTAC-TGTCCACCACGAAGACGAAGCACCAAGTGCAGCGTCGACTCCTTCTGGA 982955 Query 139584 TGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTT 139643 ||||||| ||| | |||| |||||| | ||| || || ||| |||| || |||| Sbjct 982954 TGTTATAGTCGGAAAGCGTGCGACCGTCTTCCAACTGCTTGCCGGCAAAGATGAGGCGTT 982895 Query 139644 GCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGT-TTTAGCTGTTCCACTGTG 139702 |||| || ||||| ||||| || || || ||| | || | |||| | || | ||| Sbjct 982894 GCTGGTCAGGAGGGATGCCCTCCTTATCC-TGAATCTTAGACTTTACGTTGTCGATCGTG 982836 Query 139703 TCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGC 139762 ||| ||| ||| ||||| | || | ||||||||||| | || || || || |||||| Sbjct 982835 TCGCTGGACTCGACCTCCAATGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAAATTTGC 982776 Query 139763 ATA 139765 ||| Sbjct 982775 ATA 982773 Score = 86.0 bits (94), Expect = 6e-12 Identities = 129/181 (71%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| || ||||| || |||||||| |||||| || || | || |||||||| Sbjct 982237 GTGAAGAGTGGACTCCTTCTGAATGTTGTAATCGGACAAAGTACGACCATCCTCGAGCTG 982178 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || || || |||||| || ||||| || || || |||||||| ||||| ||| | | Sbjct 982177 CTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCC-TGAATCT 982119 Query 139681 TTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739 | | || | | || | ||||||| | ||||||||||| ||| | |||||| |||| Sbjct 982118 TGCTCTTGACATTGTCGATAGTGTCGGATGACTCCACCTCAAGGGTGATCGTCTTACCGG 982059 Query 139740 T 139740 | Sbjct 982058 T 982058 >seq14 Length=1191321 Score = 98.7 bits (108), Expect = 1e-15 Identities = 335/518 (65%), Gaps = 13/518 (3%) Strand=Plus/Plus Query 52549 GTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCC 52608 ||||| || | || || |||| || ||||| | ||||||| || | || || Sbjct 900639 GTTCCCTGCATCCGGAAGAAGGCCGACTGGGCTCTCCGATGGATCTCTGACAAGAACTCC 900698 Query 52609 ACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGT 52668 || || ||| | || || ||||| || ||| || || ||| | || || ||| Sbjct 900699 ACATTCGCCAACCGCCTCGTCGCCTTCGCTGCCGTTGAGGGTATCTTCTTCAGTGGTTCC 900758 Query 52669 TTTGCGGCAATATTTTACATCAAAAC-CTTGGGCATAATGCCCGGCCTCACGTTTAGCAA 52727 || ||| | || || | | |||| | ||| | | |||||||| ||||| || ||| Sbjct 900759 TTCGCGTCCATCTTCTGGCTGAAAAAGCGTGGTC-TCATGCCCGGTCTCACATTCTCCAA 900817 Query 52728 CGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTGTTTGTATTATAATAC 52787 |||| | || || || || || || ||||||||||||||||| || |||| | | | Sbjct 900818 CGAGCTCATCTCTCGTGATGAGGGCATGCACACAGATTTTGCCTGCTTGTTGTTTTCTCT 900877 Query 52788 GCGCGTTAAAGAAAAATTGTCATATGAAAAAAT---TCTAGAC-ATGTTTAAAGAGGCCG 52843 | | || || ||| | || | || || | || | | ||||| | Sbjct 900878 CCTC-------AACAACCGTCCCAGCAAGGAGGCTGTCGAGGCTATCATCACCGAGGCTG 900930 Query 52844 TCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGCATGAACG 52903 || || || | ||||| | | |||||| | ||| | || | |||||||||| Sbjct 900931 TCACAATCGAGCAGGAGTTCCTGTCAGACGCTCTTCCCTGTGCTCTGCTCGGCATGAACG 900990 Query 52904 CGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGCAGCTCGGTC 52963 | || | ||||| ||||||||||||| ||||| ||| | ||| | || || || Sbjct 900991 CCACACTCATGTGTCAGTACATCGAGTTCGTTGCTGACCGTCTGCTCTTGGCCCTTGGCA 901050 Query 52964 AGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATCGCTCGAGG 53023 | || || ||||| || || |||||||| || ||| | ||||| ||||||| | Sbjct 901051 ACCCCAAGTACTACAACGCTACCAACCCCTTCGATTTCATGGAGAACATTTCGCTCGCCG 901110 Query 53024 GCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTAC 53061 |||| || || || ||||||| ||||| || || ||| Sbjct 901111 GCAAGACCAATTTCTTCGAGAAGCGTGTCGGTGACTAC 901148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496062648225600