Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq9 154 2e-32 seq14 111 2e-19 >seq9 Length=1465676 Score = 154 bits (170), Expect = 2e-32 Identities = 415/625 (66%), Gaps = 10/625 (2%) Strand=Plus/Minus Query 79862 CGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACC 79921 |||||||||| || | || || | | ||||| || |||| || ||||| | | || Sbjct 1037014 CGAACTCGTCACCGTAGACGTCAGCGAGGCCAGGGCACTCGTTGGGGCACATGAGTGTCC 1036955 Query 79922 ACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATA 79981 |||| || | | || || || | ||| |||||||| || ||||| ||||| || | Sbjct 1036954 ACTCGCCGTTCTGCTGGACACGCTCCATGAAGAGATCGGGGATCCACAGAGCGTAGAAGA 1036895 Query 79982 GATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAA 80041 |||| | || | | |||||| || || ||||| | || |||||||| | | | Sbjct 1036894 GATCGCGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTCCTGAGGTCGAGGAAGCCGAAGA 1036835 Query 80042 TATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCT 80101 |||| ||||| || || | ||| ||||| | | || || || ||||| || |||| Sbjct 1036834 CGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCGGGGCGCTTGTTGCCACCCT 1036775 Query 80102 GATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATG 80161 | || | ||| | || ||||| || || || | | ||| || || | ||| || |||| Sbjct 1036774 GGTCGACGTAGCGGGCAGTGTTGTTGTAGACACGGAGCATGGGGATGAGACCGTTCGATG 1036715 Query 80162 TACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAA--TTGATAGACC 80219 | || ||||| || ||| ||| ||| |||||||||| | |||| | || Sbjct 1036714 TTCCGTTGGTTCCTCCGATGTAGGAGCCAGTGGCACGAATGCGGTGGACGTTGA--GGCC 1036657 Query 80220 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 80279 ||||| || || | || ||||| || ||||| || | || || ||||||||||| Sbjct 1036656 AATTCCGCCAGCAGTCTTGGAGATCAACGCGCAGGTCTTGAGTGTGTCGTAGATGCCCTC 1036597 Query 80280 TATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA-CTAGTTC 80338 ||||| || || |||||| | || || ||| ||||| | | | ||| || | Sbjct 1036596 GATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGACGACATCT-GCGGCGAGGGTGTGC 1036538 Query 80339 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA-GTAGATTGTAC 80397 | || || || | || || || ||||| || || | || | |||| |||| | ||| Sbjct 1036537 CGGCGTTGAAGAGCGTCGGCGAGGCGTGTGTGAAGTACTTCTGCGACATGTAG-TCGTAT 1036479 Query 80398 GTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTAACAT 80456 ||||| || || || || ||| | || || || || || || |||||||| | ||| Sbjct 1036478 GTCTCGATGGCCTTCTCGATGTCCTCCATG-TGGATGCCGACGGCAACACGCATGAGCAT 1036420 Query 80457 GTGCTGAGGTCTTTCAACGATCTTG 80481 |||||| || | || ||| |||| Sbjct 1036419 GTGCTGCGGGCGCTCGGCGACCTTG 1036395 Score = 84.2 bits (92), Expect = 3e-11 Identities = 200/302 (66%), Gaps = 3/302 (1%) Strand=Plus/Minus Query 78706 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 78765 |||| ||| | ||||| |||||||| || || || | | ||||| || |||||||| Sbjct 1038179 TCCTGGTCGACAGTGAACTGAATGGGTGCAGAAGCAGCCATGGTACGGAGGTAGTACATG 1038120 Query 78766 CCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTC 78825 || || || |||||||| |||| || ||| ||||| || | ||| | | Sbjct 1038119 CCGGTCTTGAGACCGAGCTTCCAGCCAGCGAAGTGCATGGATGTGATCTTGCCCATAGTA 1038060 Query 78826 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 78885 || || || ||||| |||| || ||| |||||||||||||| || | ||| || Sbjct 1038059 GGCTCCTTCATGTGGATGTTCAGGGACTGAGACTGATCGATGAAGGCACCACGGTCAGCG 1038000 Query 78886 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 78945 ||||| | ||||| || || | || ||||| | || || || | ||| || Sbjct 1037999 GCCATCTGGATGATGGTACGCTGCGAGATCTCCCAGACGGTCTTGTACAGAGTCTTGATC 1037940 Query 78946 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 79002 || || || | ||| | | ||||||||| ||||| || || || || | ||||| Sbjct 1037939 TCGTCAGGGATGTTGGGGATGCGCTGAATGGAACCACCCTCAGCGATGATGCGGTTCTTC 1037880 Query 79003 AT 79004 || Sbjct 1037879 AT 1037878 >seq14 Length=1191321 Score = 111 bits (122), Expect = 2e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 49950 AAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGA 50009 ||||| ||| || || ||||| ||||| ||||| || | | || || |||||||| Sbjct 900872 AAACAACAAGCAGGCAAAATCTGTGTGCATGCCCTCATCACGAGAGATGAGCTCGTTGGA 900813 Query 50010 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCC 50069 || ||||| |||||||| || ||||||||||| ||||| || |||||||| || || || Sbjct 900812 GAATGTGAGACCGGGCATGAGACCACGCTTTTTCAGCCAGAAGATGGACGCGAAGGAACC 900753 Query 50070 AGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAG 50108 | |||||||| || || || || || ||||| || || Sbjct 900752 ACTGAAGAAGATACCCTCAACGGCAGCGAAGGCGACGAG 900714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718266842717520