Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq9 141 1e-28 seq14 105 9e-18 >seq9 Length=1465676 Score = 141 bits (156), Expect = 1e-28 Identities = 395/596 (66%), Gaps = 10/596 (2%) Strand=Plus/Minus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 ||||| || || || || ||||| | || |||||| || | | | || || | ||| Sbjct 1036985 CCAGGGCACTCGTTGGGGCACATGAGTGTCCACTCGCCGTTCTGCTGGACACGCTCCATG 1036926 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093 |||||||| || ||||| ||||| || ||||| | || | | |||||| || || Sbjct 1036925 AAGAGATCGGGGATCCACAGAGCGTAGAAGAGATCGCGGGCGCGAACCTCCTCCTTGCCG 1036866 Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153 ||||| | || |||||||| | | | |||| ||||| || || | ||| ||| Sbjct 1036865 TGGTTCTTCCTGAGGTCGAGGAAGCCGAAGACGTCAGCGTGCCATGGCTCGAGGTAGATG 1036806 Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213 || | | || || || ||||| || ||||| || | ||| | || ||||| || || Sbjct 1036805 GCGAAGGCACCGGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGGGCAGTGTTGTTGTAG 1036746 Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273 || | | ||| || || | ||| || |||| || ||||| || ||| ||| ||| Sbjct 1036745 ACACGGAGCATGGGGATGAGACCGTTCGATGTTCCGTTGGTTCCTCCGATGTAGGAGCCA 1036686 Query 72274 CTGGCACGAATATTGCTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 72331 |||||||||| | | |||| | || ||||| || || | || ||||| || | Sbjct 1036685 GTGGCACGAATGCGGTGGACGTTGA--GGCCAATTCCGCCAGCAGTCTTGGAGATCAACG 1036628 Query 72332 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 72391 |||| || | || || ||||||||||| || || || ||| |||||| | || | Sbjct 1036627 CGCAGGTCTTGAGTGTGTCGTAGATGCCCTCGATGCTGTCCTCCTTCATGTCGATGAGGA 1036568 Query 72392 AACAGCTAGACATTTGGTGACGA-CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 72450 | ||| ||||| | | | ||| || || || || || | || || || ||||| Sbjct 1036567 AGCAGGACGACATCT-GCGGCGAGGGTGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGT 1036509 Query 72451 GTAAACCATTTTTCAGACA-GTAGATTGTACGTCTCAATAGCTGATTCTATATCC-CATT 72508 || || | || | |||| |||| | ||| ||||| || || || || ||| | | Sbjct 1036508 GTGAAGTACTTCTGCGACATGTAG-TCGTATGTCTCGATGGCCTTCTCGATGTCCTCCAT 1036450 Query 72509 GATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTG 72564 | || || || || || |||||||| | ||| ||||| || | || ||| |||| Sbjct 1036449 G-TGGATGCCGACGGCAACACGCATGAGCATGTGCTGCGGGCGCTCGGCGACCTTG 1036395 Score = 93.3 bits (102), Expect = 6e-14 Identities = 197/291 (68%), Gaps = 5/291 (2%) Strand=Plus/Minus Query 70789 TCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATG 70848 |||| ||| | || ||||||||||| | || || || | ||||| || ||||||||| Sbjct 1038179 TCCTGGTCGACAGTGAACTGAATGGGTGCAGAAGCAGCCATGGTACGGAGGTAGTACATG 1038120 Query 70849 CCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG-GAATAGCT 70907 || || || |||||||| |||| || || ||||| || | ||| |||| | Sbjct 1038119 CCGGTCTTGAGACCGAGCTTCCAGCCAGCGAAGTGCATGGATGTGATCTTGCCCATAG-T 1038061 Query 70908 AGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 70967 ||| || ||||| || |||| |||||| |||||||||||||| || | ||| || Sbjct 1038060 AGGCTCCTTCATGTGGATGTTCAGGGACTGAGACTGATCGATGAAGGCACCACGGTCAGC 1038001 Query 70968 AGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 71027 ||||| | ||||| || || | || ||||| | || || || | ||| || Sbjct 1038000 GGCCATCTGGATGATGGTACGCTGCGAGATCTCCCAGACGGTCTTGTACAGAGTCTTGAT 1037941 Query 71028 ATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAAT 71075 || || || | ||| | | ||||||||| ||||| || || || || Sbjct 1037940 CTCGTCAGGGATGTTGGGGATGCGCTGAATGGAACCACCCTCAGCGATGAT 1037890 >seq14 Length=1191321 Score = 105 bits (116), Expect = 9e-18 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 42055 AAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGA 42114 ||||| ||| || || ||||| ||||| |||||||| | | || | |||||||| Sbjct 900872 AAACAACAAGCAGGCAAAATCTGTGTGCATGCCCTCATCACGAGAGATGAGCTCGTTGGA 900813 Query 42115 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCC 42174 || ||||| |||||||| || ||||||||||| ||||| || || ||||| || || || Sbjct 900812 GAATGTGAGACCGGGCATGAGACCACGCTTTTTCAGCCAGAAGATGGACGCGAAGGAACC 900753 Query 42175 AGAAAAGAAGATTCCTTCTACTGCCGCAAAGGC 42207 | |||||||| || || || || || ||||| Sbjct 900752 ACTGAAGAAGATACCCTCAACGGCAGCGAAGGC 900720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671137371145680