Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq14 159 5e-34 seq9 129 9e-25 >seq14 Length=1191321 Score = 159 bits (176), Expect = 5e-34 Identities = 574/890 (64%), Gaps = 71/890 (8%) Strand=Plus/Plus Query 125022 TGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCC 125081 ||| | |||||||| ||||| |||| || || ||||| | || ||| ||||||| ||| Sbjct 900259 TGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCTGAGGAGATCGATCTCTCC 900318 Query 125082 AAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCAC 125141 |||||||| |||| ||| | | || | | ||| ||||| || || || ||| Sbjct 900319 AAGGACCTTCACGACTGGAACAGGCGCCTCAATGACGACGAGCGCTTCTTCATCTCCCAC 900378 Query 125142 ATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATC-TGTTGACACGATT 125200 || | |||||||| |||| ||||||||| || |||||||| || | ||| || || || Sbjct 900379 GTTCTCGCCTTCTTCGCCGCCTCCGATGGCATTGTCAACGAGAACCTTGTCGA-GCGCTT 900437 Query 125201 CTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGA 125260 ||| ||| | || || |||| ||||| ||||| ||||| |||||||| || Sbjct 900438 CTCCGGCGAGGTTCAAATCCCCGAGGCCCGTTGCTTCTACGGCTTCCAGATCATGATGGA 900497 Query 125261 GAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC---GCA 125317 |||||| ||| | || | |||||| || || |||| ||||| |||| || ||| Sbjct 900498 GAACGTCCACGCCGAGACATACTCTCTCCTCATCGACACATACATCAGCGAGCCCAAGCA 900557 Query 125318 ----ACGTA-------AAC-------ACA--------------------TGCTCTTTAAC 125339 ||||| ||| ||| ||||| ||| Sbjct 900558 GCGCACGTACCTATTCAACGCCATTGACAACAGTAAGTCAGATCTACACGGCTCTCTAA- 900616 Query 125340 GCA-ATCGAC--ACG-------GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCG 125389 ||| | ||| ||| || || | || || || ||||| | |||| | || Sbjct 900617 GCACCTTGACTAACGCGTCGCAGTTCCCTGCATCCGGAAGAAGGCCGACTGGGCTCTCCG 900676 Query 125390 GTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGA 125449 |||||| |||| | || || | | |||| || | || || || ||||| ||||| || Sbjct 900677 ATGGATCTCTGACAAGAACTCCACATTCGCCAACCGCCTCGTCGCCTTCGCTGCCGTTGA 900736 Query 125450 GGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCAT 125509 ||| |||||||| ||| || ||| ||||||| ||||| || ||||| || ||||| Sbjct 900737 GGGTATCTTCTTCAGTGGTTCCTTCGCGTCCATCTTCTGGCTGAAAAAGCGTGGTCTCAT 900796 Query 125510 GCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTT 125569 |||||| || || | |||||| | || ||||| || |||||| | ||| || || Sbjct 900797 GCCCGGTCTCACATTCTCCAACGAGCTCATCTCTCGTGATGAGGGCATGCACACAGATTT 900856 Query 125570 TGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGT 125629 |||| | || |||| | ||| | | | | | | ||||| | || || Sbjct 900857 TGCC-TGCT--TGTT-----GTTTTCT-CTCCTCAACAACCGTCCCAGCAAGGAGGCTGT 900907 Query 125630 CATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACC 125689 | || | ||||| || || | || || || ||||| || | || | || || Sbjct 900908 CGAGGCTATCATCACCGAGGCTGTCACAATCGAGCAGGAGTTCCTGTCAGACGCTCTTCC 900967 Query 125690 GGTCAGC-ATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAG 125748 | || || | ||||||||| || || ||||| ||||||| ||||| || || | Sbjct 900968 -CTGTGCTCTGCTCGGCATGAACGCCACACTCATGTGTCAGTACATCGAGTTCGTTGCTG 901026 Query 125749 ATCGTCTACTGTACGAGTTGATTGG---CCGCAAGATTTACAACGCCAAGAATCCCTTTG 125805 | ||||| || | | |||| || |||| |||||||| | || ||||| | Sbjct 901027 ACCGTCTGCT---CTTGGCCCTTGGCAACCCCAAGTACTACAACGCTACCAACCCCTTCG 901083 Query 125806 ATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 |||||||| | ||| || || | || |||||||| || ||||||||| Sbjct 901084 ATTTCATGGAGAACATTTCGCTCGCCGGCAAGACCAATTTCTTCGAGAAG 901133 >seq9 Length=1465676 Score = 129 bits (142), Expect = 9e-25 Identities = 324/487 (67%), Gaps = 4/487 (1%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || || | ||| ||||| | || || |||||||| ||| Sbjct 1036774 CAGGGTGGCAACAAGCGCCCCGGTGCCTTCGCCATCTACCTCGAGCCATGGCACGCTGAC 1036833 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || | ||| |||| | | || ||| ||| || |||| || ||| | || Sbjct 1036834 GTCTTCGGCTTCCTCGACCTCAGGAAGAACCACGGCAAGGAGGAGGTTCGCGCCCGCGAT 1036893 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 | || || || || ||| | || ||| | |||||| |||| ||| | | ||| | Sbjct 1036894 CTCTTCTACGCTCTGTGGATCCCCGATCTCTTCATGGAGCGTGTCCAGCAGAACGGCGAG 1036953 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| || ||||||||| || || || || || | || || || || ||||| Sbjct 1036954 TGGACACTCATGTGCCCCAACGAGTGCCCTGGCCTCGCTGACGTCTACGGTGACGAGTTC 1037013 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCC-GATACGTGAGACGAGTCGATGCACG 97174 | ||| |||| | |||||| ||| |||| | |||||||| ||| ||| | Sbjct 1037014 GTCGCCCTGTACGAGAAGTACGAGAAAGCGGGCAAGGGTCGTGAGACT-GTCCGTGCTC- 1037071 Query 97175 AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233 |||| || ||| | ||||| | ||||||| ||||| || | || | ||| |||| Sbjct 1037072 AGAAGCTCTGGTACGCCATTCTCGAGGCTCAGACCGAGACCGGTAACCCCTTCATGCTCT 1037131 Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293 |||||||| | | || | || |||||||| || | || |||||| |||||| Sbjct 1037132 ACAAGGATGCTGCCAACAGGAAGAGCAACCAGAAGAACCTTGGTACCATCCGCAGCTCCA 1037191 Query 97294 ATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGG 97353 | |||||||| ||||| | |||||| | |||| || ||| || || ||| |||| Sbjct 1037192 ACCTGTGCACTGAAATCATCGAGTACACTGCTCCCGATGAGGTCGCTGTCTGCAACCTGG 1037251 Query 97354 CATCGGT 97360 | || || Sbjct 1037252 CCTCTGT 1037258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741057180613680