Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01]
218 sequences; 39,263,577 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq4 122 2e-22
>seq4
Length=1699079
Score = 122 bits (134), Expect = 2e-22
Identities = 148/199 (74%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 104362 TGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCC 104421
||| ||||| ||||||||||| ||||| || || || | ||| || ||||| || || ||
Sbjct 982743 TGTGGATTCCTTCTGAATATTGTAGTCCGAGAGTGTGCGACCATCCTCTAGCTGCTTACC 982684
Query 104422 AGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT-T 104480
||| || || || | || |||||||| || || ||||| || ||||||||| ||||| |
Sbjct 982683 AGCGAAGATAAGGCGTTGCTGATCAGGGGGGATGCCTTCCTTGTCCTGAATC-TTGCTCT 982625
Query 104481 TTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTG 104540
| ||||| || | || ||| | || ||||| || || || ||||| || || || |
Sbjct 982624 TGACATTGTCGATAGTGTCGGATGACTCCACCTCAAGGGTGATCGTCTTGCCGGTGAGGG 982565
Query 104541 TTTTTACAAATATCTGCAT 104559
| || || || ||||||||
Sbjct 982564 TCTTGACGAAGATCTGCAT 982546
Score = 122 bits (134), Expect = 2e-22
Identities = 145/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || |||||||| || || || | ||||||||| | || || ||
Sbjct 982970 GTCGACTCCTTCTGGATGTTATAGTCGGAAAGCGTGCGACCGTCTTCCAACTGCTTGCCG 982911
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || || | || || |||||||| || || || |||||||||||||| | |||
Sbjct 982910 GCAAAGATGAGGCGTTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGAATCTTAGACTTT 982851
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| || || | || ||||| | || ||||| | ||| || ||||| || || || ||
Sbjct 982850 ACGTTGTCGATCGTGTCGCTGGACTCGACCTCCAATGTGATGGTCTTGCCGGTGAGGGTC 982791
Query 104543 TTTACAAATATCTGCAT 104559
|| ||||| || |||||
Sbjct 982790 TTGACAAAAATTTGCAT 982774
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151395184000344
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |