Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq20 122 1e-23 seq3 109 9e-20 >seq20 Length=976498 Score = 122 bits (134), Expect = 1e-23 Identities = 216/327 (66%), Gaps = 55/327 (17%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| | | || || |||||||| || ||||||||||| ||||| Sbjct 607138 GCCAAGCGTCACCGCAAGATTT-TGCGTGACAACATCCAGGGTATCACCAAGCCCGCTAT 607196 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG------------------- 16532 ||| ||||| || ||||||||||| ||||||||| |||||| Sbjct 607197 CCGCCGTCTCGCGCGTCGTGGTGGTGTCAAGCGTATCTCTGCCAGTAAGATGCCTTAATC 607256 Query 16533 ------------------------GAT----------TGGTCTATGAAGAGATTCGTGAT 16558 ||| || |||| ||||||| || | | Sbjct 607257 TCGCGGTCCCATGGAAGCAATACTGATATCGTCGCAGTGATCTACGAAGAGACCCGCGGT 607316 Query 16559 GTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCT 16618 || ||||||| ||||||| ||| || |||| |||||| || ||| ||||||||||| Sbjct 607317 GTCTTGAAGACCTTCCTCGAGAGTGTCATCCGTGATGCCGTCACCTACACCGAGCACGCC 607376 Query 16619 AAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAG 16678 || || ||||| ||||||||| | || ||||||| ||| | || || || ||||||| Sbjct 607377 AAGCGCAAGACCGTCACCTCCCTCGACGTCGTCTACGCACTCAAGCGCCAGGGCCGTACC 607436 Query 16679 ATTTATGGTTTTGGAAGTTAATCTTCT 16705 | || ||||| || ||||| | ||| Sbjct 607437 CTCTACGGTTTCGGTGGTTAAGCGTCT 607463 >seq3 Length=1874557 Score = 109 bits (120), Expect = 9e-20 Identities = 85/99 (86%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||||| | || || |||||||| || ||||||||||| ||||| Sbjct 1392647 GCCAAGCGTCACCGCAAGATCT-TGCGCGACAACATCCAGGGTATCACCAAGCCCGCTAT 1392589 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||||||||| || ||||||||||| ||||||||| |||| Sbjct 1392588 CCGTCGTCTCGCACGTCGTGGTGGTGTCAAGCGTATCTC 1392550 Score = 95.1 bits (104), Expect = 2e-15 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| |||| |||| |||||| ||||||| || || |||| ||| | Sbjct 1392496 TGATCTACGAGGAGACCCGTGGTGTTCTGAAGACCTTCCTCGAGGGTGTCATCCGTGACG 1392437 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || || || |||||||| || || ||||||||||| || | ||| | ||||| | Sbjct 1392436 CCGTCACATACACTGAGCACGCCAAGCGCAAGACTGTCACTTCTCTCGATGTTGTCTACG 1392377 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 | | || ||||||||||||| | || ||||| || Sbjct 1392376 CTCTCAAGCGTCAAGGCCGTACCCTCTACGGTTTCGG 1392340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075000681074