Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq9 334 2e-86 >seq9 Length=1465676 Score = 334 bits (370), Expect = 2e-86 Identities = 1155/1781 (65%), Gaps = 24/1781 (1%) Strand=Plus/Plus Query 363391 TTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAA 363450 ||||| | |||||| | ||| || ||||| || ||||| || | | | || Sbjct 1036348 TTCGGCTTCAAGACGCTCGAGCGCTCATACCTGCTCCGCATCAACGGCAAGGTCGCCGAG 1036407 Query 363451 CGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCC 363510 ||||||||||| ||| | ||||||||||| | || ||||| ||| | || Sbjct 1036408 CGCCCGCAGCACATGCTCATGCGTGTTGCCGTCGGCATCCACATGGAGGACATCGAGAAG 1036467 Query 363511 GCGATTGAAACATATAAGCTTCTAAGT-GCTCGTGTA-TTCACGCACGCCACGCCAACAA 363568 || || || ||||| | || | | || || ||| ||||| |||||| |||| || Sbjct 1036468 GCCATCGAGACATACGA-CTAC-ATGTCGCAGAAGTACTTCACACACGCCTCGCCGACGC 1036525 Query 363569 TGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGG 363628 | | ||| || || || | || |||||||| || ||||| || | | ||||||| Sbjct 1036526 TCTTCAACGCCGGCACACCCTCGCCGCAGATGTCGTCCTGCTTCCTCATCGACATGAAGG 1036585 Query 363629 ACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATG 363688 | || ||||||||| |||| |||||||| |||| || || | || ||||||| || Sbjct 1036586 AGGACAGCATCGAGGGCATCTACGACACACTCAAGACCTGCGCGTTGATCTCCAAGACTG 1036645 Query 363689 CAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTG-CACAGAACAGTTACATTCGCGG 363746 | ||||||||||| | | || ||||| |||||| ||| | | ||||| | || Sbjct 1036646 CTGGCGGAATTGGCCTCAACG-TCCACCGCATTCGTGCCACTG-GCTCCTACATCGGAGG 1036703 Query 363747 CACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAG 363806 || ||| ||||| || || | |||||||| ||||| | |||| ||||| | Sbjct 1036704 AACCAACGGAACATCGAACGGTCTCATCCCCATGCTCCGTGTCTACAACAACACTGCCCG 1036763 Query 363807 GTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCA 363866 ||||||||||||||||| |||||| || || || || || || |||||||| Sbjct 1036764 CTACGTCGACCAGGGTGGCAACAAGCGCCCCGGTGCCTTCGCCATCTACCTCGAGCCATG 1036823 Query 363867 TCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCG 363926 || || || | || | || || || ||| |||| ||| || || ||||| | || Sbjct 1036824 GCACGCTGACGTCTTCGGCTTCCTCGACCTCAGGAAGAACCACGGCAAGGAGGAGGTTCG 1036883 Query 363927 TGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGC 363986 || || ||||| ||||| || || ||| | | || | || ||| |||| || | || Sbjct 1036884 CGCCCGCGATCTCTTCTACGCTCTGTGGATCCCCGATCTCTTCATGGAGCGTGTCCA-GC 1036942 Query 363987 AGGTAAG-AATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGG 364045 || | | ||| ||||| | ||||| |||| || || || || | || || | | Sbjct 1036943 AGAACGGCGAGTGGACACTCATGTGCCCCAACGAGTGCCCTGGCCTCGCTGACGTCTACG 1037002 Query 364046 GTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAA 364105 ||||||| | || || || ||||| ||||| || | ||| |||| |||| |||| Sbjct 1037003 GTGACGAGTTCGTCGCCCTGTACGAGAAGTACGAGAAAGCGGGCAAGGGTCGTGAGACTG 1037062 Query 364106 TTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCT 364165 | | || |||||||| |||| ||||| | || | |||| ||||| || | |||| Sbjct 1037063 TCCGTGCTCAGAAGCTCTGGTACGCCATTCTCGAGGCTCAGACCGAGACCGGTAACCCCT 1037122 Query 364166 ATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTC 364225 ||| | ||||| ||| | |||| | ||| ||||||| || |||||||||| | || Sbjct 1037123 TCATGCTCTACAAGGATGCTGCCAACAGGAAGAGCAACCAGAAGAACCTTGGTACCA-TC 1037181 Query 364226 AGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTA 364284 |||| |||||| || || || || || || ||||| |||||||| ||| || || Sbjct 1037182 CGCAGCTCCAACCTGTGCACTGAAATCATCGAGTACACTGCTCCCGATGAGGTCGCTGTC 1037241 Query 364285 TGTAACCTTGC----GTCGATCGCGCTTCCGGCGTT--TGTAAAAGATGGTACTTTTGAC 364338 || ||||| || || | || | | ||| |||| | || || || ||| Sbjct 1037242 TGCAACCTGGCCTCTGTTGCTCTCCCCTCCTTCGTTGACTTCAAGCGCGGCGAGTTCGAC 1037301 Query 364339 CACCAGCATCTTTATGACGTAACCTATCATG-CT--ACTTGCAATCTCGACAAGGTTATC 364395 |||| | ||| | || || | ||| | || || | || ||| ||||| | ||| Sbjct 1037302 TTCCAGAAGCTTCACGATGT---CGTTCAGGTCTGCACACGTAACCTCAACAAGATCATC 1037358 Query 364396 GACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATT 364455 || || | || || | || || || || | ||||| | || ||| Sbjct 1037359 GAGGTCAACCACTACCCCGTCGAGGAGGCACGCCGCAGCAACTTCCGTCACAGACCCATT 1037418 Query 364456 GGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATTCG 364515 ||||| ||||| ||||| || ||||| | ||| | ||| || | || || || Sbjct 1037419 GGTCTCGGTGTCCAGGGTCTTGCTGATGCTTTCCTTGCTCTCCGCCTGCCTTTCGAGTCT 1037478 Query 364516 CCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACT 364575 ||||| || | || || | ||||||| ||||| || || ||||| |||| Sbjct 1037479 CCTGAAGCCAAGGAGCTCAACATCAAGATCTTCGAAACCATCTACCACGCCGCTTTGACC 1037538 Query 364576 GCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTT 364635 | || || || | || || || ||| || |||||||| || || | Sbjct 1037539 TCCTCCTGCGACATTGCTAAGGAGCTTGGCCCCTACGAGACATATGAGGGCTCGCCCATC 1037598 Query 364636 TCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGG 364695 || |||| | | |||| ||| || ||| |||| ||| | | | ||| ||||| Sbjct 1037599 TCCAAGGGTGAGCTTCAGTATGACCTGTGGGGCGTCAAGCCCACCGATCTTTGGGACTGG 1037658 Query 364696 GATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCC 364755 || |||| | || || |||| ||| |||||||| || | |||||| Sbjct 1037659 GAGGCGCTGAAGGCGAAGATTGCTCAGCACGGTGTCCGCAACTCGCTACTCGTCGCGCCC 1037718 Query 364756 ATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACA 364815 ||||| || || || || | ||||| ||||| ||||||||||||||||| || | ||| Sbjct 1037719 ATGCCTACTGCCTCCACCTCCCAGATTCTCGGCAACAACGAGTGCTTCGAGCCCTACACA 1037778 Query 364816 AGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTA 364875 || | || || ||||| || ||| | || || || | ||| || || | | Sbjct 1037779 TCGAACATCTACTCTCGCCGCGTGCTTGCTGGTGAGTTCCAGGTTGTCAACCCCTGGTTG 1037838 Query 364876 GTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCC 364935 ||||||| || |||| || || ||| || | |||||||||| |||||||| Sbjct 1037839 CTCAAGGACCTGGTCGACATGGGTCTCTGGACCGAGAACATGAAGAACCGCATCATCGCT 1037898 Query 364936 GCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAA 364995 | |||||| | ||| ||| || | || || || | ||| || | ||||| Sbjct 1037899 GAGGGTGGTTCCATTCAGCGCATCCCCAACATCCCTGACGAGATCAAGACTCTGTACAAG 1037958 Query 364996 ACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTT 365055 ||||| ||||| || || ||| || |||| | ||||| || || || ||||| || Sbjct 1037959 ACCGTCTGGGAGATCTCGCAGCGTACCATCATCCAGATGGCCGCTGACCGTGGTGCCTTC 1038018 Query 365056 ATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACA 365115 ||| |||| ||||| | ||| | ||||| |||| || | |||| | ||| Sbjct 1038019 ATCGATCAGTCTCAGTCCCTGAACATCCACATGAAGGAGCCTACTATGGGCAAGATCACA 1038078 Query 365116 TCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 |||||||| ||| || ||||| |||||| ||||| || Sbjct 1038079 TCCATGCACTTCGCTGGCTGGAAGCTCGGTCTCAAGACCGG 1038119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303349959570476