Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq14 113 4e-20 seq4 105 6e-18 seq20 98.7 9e-16 seq13 93.3 4e-14 >seq14 Length=1191321 Score = 113 bits (124), Expect = 4e-20 Identities = 339/516 (66%), Gaps = 17/516 (3%) Strand=Plus/Plus Query 46087 CCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACT 46146 || ||| | || ||||| |||||||||| | |||||| || | | | || Sbjct 900642 CCCTGCATCCGGAAGAAGGCCGACTGGGCTCTCCGATGGATCTCTGACAAGAACTCCACA 900701 Query 46147 TTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTT 46206 |||||| | || | || ||||| || || ||||| |||| || ||| || Sbjct 900702 TTCGCCAACCGCCTCGTCGCCTTCGCTGCCGTTGAGGGTATCTTCTTCAGTGGTTCCTTC 900761 Query 46207 GCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAG 46266 || ||||||| | | |||| || |||||||||| || || || ||||||| Sbjct 900762 GCGTCCATCTTCTGGCTGAAAAAGCGTGGTCTCATGCCCGGTCTCACATTCTCCAACGAG 900821 Query 46267 CTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCGC 46326 || || || || || |||||| |||| || || ||||| || | | | | ||| | Sbjct 900822 CTCATCTCTCGTGATGAGGGCATGCACACAGATTTTGCCTGCTTGTTGTTTT---CTCTC 900878 Query 46327 GTGCACGACAAGCTTGCGCCCGACACCGTG-CTGA----GC-ATGTTCAAGGAGGCGGTG 46380 | | |||| | | ||| || | | ||| || || ||| ||||| || Sbjct 900879 CT---CAACAACCGT---CCCAGCAAGGAGGCTGTCGAGGCTATCATCACCGAGGCTGTC 900932 Query 46381 GCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACG-C 46439 | || ||| ||||||| | | | ||| || ||| ||| ||||| |||||||||| | Sbjct 900933 ACAATCGAGCAGGAGTTCCTGTCAGACGCTCTTCCCTGTGCTCTGCTCGGCATGAACGCC 900992 Query 46440 ACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCA 46499 ||| || ||||| | ||||||||||| || || ||||| |||||| || ||| | | Sbjct 900993 ACACTC-ATGTGTCAGTACATCGAGTTCGTTGCTGACCGTCTGCTCTTGGCCCTTGGCAA 901051 Query 46500 GCCGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGG 46559 || ||| | | |||| ||| || || || || ||| | ||||| || || | || Sbjct 901052 CCCCAAGTACTACAACGCTACCAACCCCTTCGATTTCATGGAGAACATTTCGCTCGCCGG 901111 Query 46560 CAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 ||| || ||||| ||||| ||||| ||||| || || Sbjct 901112 CAAGACCAATTTCTTCGAGAAGCGTGTCGGTGACTA 901147 >seq4 Length=1699079 Score = 105 bits (116), Expect = 6e-18 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || |||||||| ||||||||||||||| || || || ||||| ||||||||||| Sbjct 982230 GTGGACTCCTTCTGAATGTTGTAATCGGACAAAGTACGACCATCCTCGAGCTGCTTGCCG 982171 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| |||| || ||||||||||| || ||||| ||||| ||||| || || |||| Sbjct 982170 GCGAAGATCAAGCGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGAATCTTGCTCTTG 982111 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGT 131210 | | || | ||| |||| ||||| | || | ||| | || |||||||| Sbjct 982110 ACATTGTCGATAGTGTCGGATGACTCCACCTCAAGGGTGATCGTCTTACCGGT 982058 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| || || | || || ||||| ||||| ||||| || Sbjct 982772 CCACCACGGAGACGGAGCACCAAGTGGAGTGTGGATTCCTTCTGAATATTGTAGTCCGAG 982713 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||||||||||| || ||| |||| | || ||||| || || ||| Sbjct 982712 AGTGTGCGACCATCCTCTAGCTGCTTACCAGCGAAGATAAGGCGTTGCTGATCAGGGGGG 982653 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || || ||||| | || | ||| |||| ||||| | Sbjct 982652 ATGCCTTCCTTGTCCTGAATCTTGCTCTTGACATTGTCGATAGTGTCGGATGACTCCACC 982593 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || ||||| || || || ||||| |||||||| Sbjct 982592 TCAAGGGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 982546 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| || || | ||||||||||| || ||||| || ||| Sbjct 983000 CCACCACGAAGACGAAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTATAGTCGGAA 982941 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||| || | ||||||||| || |||| | || |||||||| |||||| Sbjct 982940 AGCGTGCGACCGTCTTCCAACTGCTTGCCGGCAAAGATGAGGCGTTGCTGGTCAGGAGGG 982881 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || || || || || ||| | | || | || ||| ||||||||| Sbjct 982880 ATGCCCTCCTTATCCTGAATCTTAGACTTTACGTTGTCGATCGTGTCGCTGGACTCGACC 982821 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || ||||| || || || || ||||| ||||| Sbjct 982820 TCCAATGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAAATTTGCAT 982774 >seq20 Length=976498 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || ||||| | || | || |||||||| || |||||||| ||| Sbjct 715757 CCACCACGCAGGCGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 715816 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| ||| |||| | ||||||||||||||| || Sbjct 715817 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGA 715876 Query 131128 ATTCCTTCTTTGTC 131141 || || || ||||| Sbjct 715877 ATGCCCTCCTTGTC 715890 >seq13 Length=1247346 Score = 93.3 bits (102), Expect = 4e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 ||||||||||| || |||||||| ||| | |||||| |||||| ||||||||||| Sbjct 565583 GTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 565524 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 || |||| || |||||||||||||| || || || || ||||| Sbjct 565523 GCAAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 565480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472011513765120