Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq9 150 2e-31 seq14 96.9 4e-15 >seq9 Length=1465676 Score = 150 bits (166), Expect = 2e-31 Identities = 419/633 (66%), Gaps = 10/633 (2%) Strand=Plus/Minus Query 62994 CGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACC 63053 |||||||||| || | || | | || ||||| || || | || ||||| | | || Sbjct 1037014 CGAACTCGTCACCGTAGACGTCAGCGAGGCCAGGGCACTCGTTGGGGCACATGAGTGTCC 1036955 Query 63054 ACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATA 63113 |||| |||| | || || || | ||| |||||||| || ||||| ||||| || | Sbjct 1036954 ACTCGCCGTTCTGCTGGACACGCTCCATGAAGAGATCGGGGATCCACAGAGCGTAGAAGA 1036895 Query 63114 GATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAA 63173 |||| | || | | ||||| || || ||||| | || |||||||| | | | Sbjct 1036894 GATCGCGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTCCTGAGGTCGAGGAAGCCGAAGA 1036835 Query 63174 TATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCT 63233 |||| ||||| || || | ||| ||||| | | || || || ||||| || |||| Sbjct 1036834 CGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCGGGGCGCTTGTTGCCACCCT 1036775 Query 63234 GATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATG 63293 | || | ||| | || ||||| || || || | | ||| || || | ||| || |||| Sbjct 1036774 GGTCGACGTAGCGGGCAGTGTTGTTGTAGACACGGAGCATGGGGATGAGACCGTTCGATG 1036715 Query 63294 TACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAA--TTGATAGACC 63351 | || ||||| ||| ||| ||| ||| |||||||||| | |||| | || Sbjct 1036714 TTCCGTTGGTTCCTCCGATGTAGGAGCCAGTGGCACGAATGCGGTGGACGTTGA--GGCC 1036657 Query 63352 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 63411 ||||| || || | || ||||| || ||||| || | || || ||||||||||| Sbjct 1036656 AATTCCGCCAGCAGTCTTGGAGATCAACGCGCAGGTCTTGAGTGTGTCGTAGATGCCCTC 1036597 Query 63412 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA-CTAGTTC 63470 || || || ||| |||||| | || || ||| ||||| | | | ||| || | Sbjct 1036596 GATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGACGACATCT-GCGGCGAGGGTGTGC 1036538 Query 63471 CCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGA-AAGTAGATTGTAC 63529 | || || || | || || || ||||| || || | || | || | |||| | ||| Sbjct 1036537 CGGCGTTGAAGAGCGTCGGCGAGGCGTGTGTGAAGTACTTCTGCGACATGTAG-TCGTAT 1036479 Query 63530 GTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAACAT 63588 ||||| || || || || ||| | || || || || || || |||||||| | ||| Sbjct 1036478 GTCTCGATGGCCTTCTCGATGTCCTCCATG-TGGATGCCGACGGCAACACGCATGAGCAT 1036420 Query 63589 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 63621 |||||| || | || ||| |||| ||| || Sbjct 1036419 GTGCTGCGGGCGCTCGGCGACCTTGCCGTTGAT 1036387 >seq14 Length=1191321 Score = 96.9 bits (106), Expect = 4e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 32651 AAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGA 32710 ||||| ||| || || ||||| ||| | ||||| || | | || | |||||||| Sbjct 900872 AAACAACAAGCAGGCAAAATCTGTGTGCATGCCCTCATCACGAGAGATGAGCTCGTTGGA 900813 Query 32711 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCC 32770 || ||||| |||||||| || ||||||||||| ||||| || |||||||| || || || Sbjct 900812 GAATGTGAGACCGGGCATGAGACCACGCTTTTTCAGCCAGAAGATGGACGCGAAGGAACC 900753 Query 32771 AGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 32803 | ||||| || || || || || || ||||| Sbjct 900752 ACTGAAGAAGATACCCTCAACGGCAGCGAAGGC 900720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633630273352800