Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq4 105 6e-18 >seq4 Length=1699079 Score = 105 bits (116), Expect = 6e-18 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | ||||| || | ||||| | || |||||||| || Sbjct 982546 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACGATCACCCTTGAGGTGGAGTCATCC 982605 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||||||||| || || ||| || || ||||| ||||| || || ||||| | Sbjct 982606 GACACTATCGA--CAATGTCAAGAGCAAGATTCAGGACAAGGAAGGCATCCCCCCTGATC 982663 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || || |||| || || || || || |||| |||| |||||| | || |||| Sbjct 982664 AGCAACGCCTTATCTTCGCTGGTAAGCAGCTAGAGGATGGTCGCACACTCTCGGACTACA 982723 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||| || |||||||| || || || ||||| Sbjct 982724 ATATTCAGAAGGAATCCACACTCCACTTGGTGCT 982757 Score = 100 bits (110), Expect = 2e-16 Identities = 132/181 (73%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTG--AAGC 25080 |||||||| | ||||| | || |||||||| || ||||||||||| || || ||| Sbjct 982058 ACCGGTAAGACGATCACCCTTGAGGTGGAGTCATCCGACACTATCGA--CAATGTCAAGA 982115 Query 25081 AAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCA 25140 || || ||||| ||||| || || || ||||| ||||| | || || ||||||| Sbjct 982116 GCAAGATTCAGGACAAGGAAGGCATCCCCCCAGACCAGCAGCGCTTGATCTTCGCCGGCA 982175 Query 25141 AACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTAC 25200 | || | || |||| ||| ||| || ||||||||| ||||| || || ||||| || | Sbjct 982176 AGCAGCTCGAGGATGGTCGTACTTTGTCCGATTACAACATTCAGAAGGAGTCCACTCTTC 982235 Query 25201 A 25201 | Sbjct 982236 A 982236 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| | ||||| || |||||||| | || || ||||| Sbjct 982774 ATGCAAATTTTTGTCAAGACCCTCACCGGCAAGACCATCACATTGGAGGTCGAGTCCAGC 982833 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| | ||| | || | ||| || || || || || || |||||||| Sbjct 982834 GACACGATCGACAACGTAAAGTCTAAGATTCAG-GATAAGGAGGGCATCCCTCCTGACCA 982892 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | || ||||||||||| || || ||||| | |||||| | ||| || || Sbjct 982893 GCAACGCCTCATCTTTGCCGGCAAGCAGTTGGAAGACGGTCGCACGCTTTCCGACTATAA 982952 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || ||||| || || ||||| Sbjct 982953 CATCCAGAAGGAGTCGACGCTGCACTTGGTGCT 982985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433326848701670