Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq14 109 1e-18 seq5 107 4e-18 seq13 91.5 3e-13 >seq14 Length=1191321 Score = 109 bits (120), Expect = 1e-18 Identities = 272/404 (67%), Gaps = 12/404 (3%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 ||||||||||| | |||||| | || || || ||||||||| ||||||||||| || Sbjct 901129 TCGAAGAAATTGGTCTTGCCGGCGAGCGAAATGTTCTCCATGAAATCGAAGGGGTTGGTA 901070 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| | |||||| | |||||| || | || | ||||| || || ||||| | Sbjct 901069 GCGTTGTAGTACTTGGGGTTGCCAAGGGCCAAGAGCAGACGGTCAGCAACGAACTCGATG 901010 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| | ||| ||| | ||||||||| | || | ||| |||| || || | | | Sbjct 901009 TACTGACACATGAGTGTGGCGTTCATGCCGAGCAGAGCACAGGGAAGAGCGTCTGACAGG 900950 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCA---CCT-GTGCCAGAGA 251798 || |||| ||| | | || ||||| | || |||| | ||| | | | || Sbjct 900949 AACTCCTGCTCGATTGTGACAGCCTCGGTGATGATAGCCTCGACAGCCTCCTTGCTGGGA 900890 Query 251799 CAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAA-CTGTTGGTGCAGACCCTCGT 251857 | | ||||| || | ||| ||| || ||| |||| ||||| ||||| | Sbjct 900889 C-GGTTGTTGAGGAGAGAAAACAACA--AGCAGGCAAAATCTGT--GTGCATGCCCTCAT 900835 Query 251858 CGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCC 251917 | ||| ||||| ||||||||| | || || ||||| | ||||| || | |||| Sbjct 900834 CACGAGAGATGAGCTCGTTGGAGAATGTGAGACCGGGCATGAGACCACGCTTTTTCAGCC 900775 Query 251918 AGAAGATTG-CGCAAAAGGATCCAGAGAACAGCAGACCCTCGAC 251960 ||||||| | ||| ||||| ||| ||| | | |||||| || Sbjct 900774 AGAAGATGGACGC-GAAGGAACCACTGAAGAAGATACCCTCAAC 900732 >seq5 Length=1703286 Score = 107 bits (118), Expect = 4e-18 Identities = 170/242 (70%), Gaps = 9/242 (4%) Strand=Plus/Plus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || || ||||| |||||||||||||||||||| || || | || || || || || Sbjct 660593 GTCGGCTCCCTGTCTGGTGGTTGGAAGATGAAGCTCGCTCTGGCGCGTGCTATGCTTATG 660652 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 || || || || || |||| || || || || |||||| ||||| ||||||| ||| Sbjct 660653 CGCGCTGACGTTCTGTTGCTCGACGAACCCACTAACCACTTGGACGTTGCCAACGTTGCC 660712 Query 279816 TGGCT---AGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCAC 279872 ||||| || | ||||| | || | | | | | | ||||| |||||| Sbjct 660713 TGGCTGCAAGAG---TACCTGAAGAGCCACACCGAGATCACCAGTTTGATTGTTTCTCAC 660769 Query 279873 GACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAG 279932 |||||||| ||||| || ||||||||| | | |||| || || |||||||| |||| Sbjct 660770 GACTCTGGATTCCTCGACGCCGTGTGCACCGACATCTACCATTACGAGCAAAA---GAAG 660826 Query 279933 CT 279934 || Sbjct 660827 CT 660828 >seq13 Length=1247346 Score = 91.5 bits (100), Expect = 3e-13 Identities = 135/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 279378 GCATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACCGG 279437 || || |||| ||||| ||||| ||| |||| |||| |||||||||| | || Sbjct 1077529 GCCTACGGTGCTAAGATCCTGCTTAACCAGACCCACCTCCGTCTCAAGCGTGGTCAGCGT 1077588 Query 279438 TATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAAC 279497 || |||||| |||| ||||| || | ||||||| || || ||||||||||| ||| Sbjct 1077589 TACGGTCTCCTCGGACCCAACGGTTCCGGTAAGACTACCCTCATGCGCGCCATCAACAAC 1077648 Query 279498 GGTCAGCTGGAAGGATTTCCTAACGCA-TCTGAGGTAAGGACAGTGTATGTAGAGCACGA 279556 | ||| | | ||| ||||| | ||| ||||| | ||| || || || |||||||| Sbjct 1077649 GAGCAGGTTG-AGGGTTTCCCCAAGCAGAGCGAGGTTAAGACCGTCTACGTCGAGCACGA 1077707 Query 279557 CATCGACTC 279565 | | ||||| Sbjct 1077708 CTTGGACTC 1077716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027833929123338