Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq4 185 2e-41 seq14 143 5e-29 seq5 116 7e-21 >seq4 Length=1699079 Score = 185 bits (204), Expect = 2e-41 Identities = 180/229 (79%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| || ||||| || | |||||||| ||||| ||||| || ||||||||||| ||||| Sbjct 983001 TCCACCACGAAGACGAAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTATAGTCGGA 982942 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 || || | || ||||| |||||||| ||||| || ||||| | ||| ||||| || || Sbjct 982941 AAGCGTGCGACCGTCTTCCAACTGCTTGCCGGCAAAGATGAGGCGTTGCTGGTCAGGAGG 982882 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG-ATTCTA 68412 ||||| ||||| || |||||||| | ||| ||| ||||| ||||| |||| | || | Sbjct 982881 GATGCCCTCCTTATCCTGAATCTTAGACTTTACGTTGTCGATCGTGTC-GCTGGACTCGA 982823 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||| |||||||| || || |||||||||||||| || || ||||| Sbjct 982822 CCTCCAATGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAAATTTGCAT 982774 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || ||||| || || || || || || || ||| Sbjct 982772 CCACCACGGAGACGGAGCACCAAGTGGAGTGTGGATTCCTTCTGAATATTGTAGTCCGAG 982713 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | ||||| |||| |||||| || ||||| || || | ||| || || || || Sbjct 982712 AGTGTGCGACCATCCTCTAGCTGCTTACCAGCGAAGATAAGGCGTTGCTGATCAGGGGGG 982653 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| |||||||| |||||| ||||| ||||| | ||| || || Sbjct 982652 ATGCCTTCCTTGTCCTGAATCTTGCTCTTGACATTGTCGATAGTGTCGGATGACTCCACC 982593 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || || ||||||||||||||||| |||||||| Sbjct 982592 TCAAGGGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 982546 Score = 131 bits (144), Expect = 3e-25 Identities = 152/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | ||| || |||||||| || || ||||| |||||||| Sbjct 982260 CCACCACGAAGGCGGAGGACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCGGAC 982201 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| || | |||||| |||||||| || | | || ||||| || || Sbjct 982200 AAAGTACGACCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGG 982141 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| |||||||| |||||| ||||| ||||| | ||| || || Sbjct 982140 ATGCCTTCCTTGTCCTGAATCTTGCTCTTGACATTGTCGATAGTGTCGGATGACTCCACC 982081 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGA 68439 || | |||||| || || || |||| Sbjct 982080 TCAAGGGTGATCGTCTTACCGGTGA 982056 Score = 109 bits (120), Expect = 1e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||||| || | || || |||||||| || |||||||| || ||||| Sbjct 982544 CCACCGCGCAGGCGCAGGACGAGATGCAGTGTGGACTCCTTCTGGATGTTGTAGTCGGAC 982485 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| || | ||||| || ||||| || || | || || || || || Sbjct 982484 AAGGTACGGCCATCCTCAAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGATCTGGAGGG 982425 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||||||||| ||||| | ||||||| || ||||| || | || || || Sbjct 982424 ATACCCTCCTTGTCTTGGATCTTCGACTTGACGTTGTCAATGGTATCGGAGGACTCGACC 982365 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 || | |||||||| || || || Sbjct 982364 TCGAGAGTGATGGTCTTGCCGGT 982342 >seq14 Length=1191321 Score = 143 bits (158), Expect = 5e-29 Identities = 319/471 (68%), Gaps = 12/471 (3%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||| || ||||||||||| || || || ||||||||| |||| |||||| | Sbjct 901166 CATGACACCGGCCTTCTGGTAGTCACCGACACGCTTCTCGAAGAAATTGGTCTTGCCGGC 901107 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054 ||| |||||| ||||||||| || |||||||| ||| | | |||||||| || Sbjct 901106 GAGCGAAATGTTCTCCATGAAATCGAAGGGGTTGGTAGCGTTGTAGTACTTGGGGTTGCC 901047 Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114 || || || | |||||||| ||||||||||||||||| | ||| || | ||| Sbjct 901046 AAGGGCCAAGAGCAGACGGTCAGCAACGAACTCGATGTACTGACACATGAGTGTGGCGTT 900987 Query 10115 CATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGC 10174 |||||| | || ||||| | ||||| | | ||| |||| ||| | | ||| || Sbjct 900986 CATGCCGAGCAGAGCACAGGGAAGAGCGTCTGACAGGAACTCCTGCTCGATTGTGACAGC 900927 Query 10175 TTCCTCGACGATGCTCTTTACCACGTC----AAGGGACAGCTTGTTCTCGAGCTTCGAAT 10230 || || ||| || || | || ||||| | ||||| ||| ||| Sbjct 900926 CTCGGTGATGATAGCCTCGACAGCCTCCTTGCTGGGAC-GGTTGTT---GAGGAGAGAAA 900871 Query 10231 ACAGGAGCTCTCCAAACTGCTG-GTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGAC 10289 ||| | |||| | ||| ||| | |||||| || || ||||| ||||||||| Sbjct 900870 ACAACAAGCAGGCAAAAT-CTGTGTGCATGCCCTCATCACGAGAGATGAGCTCGTTGGAG 900812 Query 10290 AAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGG-CGCAGAACGACCC 10348 || |||||||||||||| || || || ||||||||| |||| ||| ||| || || Sbjct 900811 AATGTGAGACCGGGCATGAGACCACGCTTTTTCAGCCAGAAGATGGACGC-GAAGGAACC 900753 Query 10349 GGAGAACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAA 10399 ||| | | |||||| ||| | ||||||||||||| | ||||| Sbjct 900752 ACTGAAGAAGATACCCTCAACGGCAGCGAAGGCGACGAGGCGGTTGGCGAA 900702 >seq5 Length=1703286 Score = 116 bits (128), Expect = 7e-21 Identities = 166/228 (73%), Gaps = 8/228 (4%) Strand=Plus/Minus Query 225415 CTCGTAATGAACAATTGCCGAGCACACTGCGTCAAGGAAGCCAGAGTCGTGGGACACAAT 225474 ||||||||| || | | |||||| ||||| ||||| ||||||||||| || ||||| Sbjct 660817 CTCGTAATGGTAGATGTCGGTGCACACGGCGTCGAGGAATCCAGAGTCGTGAGAAACAAT 660758 Query 225475 GA---TGGACGACACGTTCGTCAGGCCCTTGAGGTGCGTGATG-AGCCATGCCACGTTGC 225530 | ||| | || | || ||| ||| |||| | | || ||||| || |||||| Sbjct 660757 CAAACTGGTGATCTCGGT-GT--GGCTCTTCAGGTAC-TCTTGCAGCCAGGCAACGTTGG 660702 Query 225531 TGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTCAGCATCAATGAGGATGG 225590 ||||||| |||||| || |||||||| || | ||| | |||||| || || || | Sbjct 660701 CAACGTCCAAGTGGTTAGTGGGTTCGTCGAGCAACAGAACGTCAGCGCGCATAAGCATAG 660642 Query 225591 CGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGAGCCGA 225638 | |||| |||| |||||||| ||||| || || ||||||||||||| Sbjct 660641 CACGCGCCAGAGCGAGCTTCATCTTCCAACCACCAGACAGGGAGCCGA 660594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921619888578960