Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq9 435 6e-117 seq14 228 2e-54 >seq9 Length=1465676 Score = 435 bits (482), Expect = 6e-117 Identities = 1385/2118 (65%), Gaps = 87/2118 (4%) Strand=Plus/Minus Query 243741 TGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTGAGTC 243800 ||||||| | |||||| || ||| |||| | ||||||||||||||||||||||| | Sbjct 1038166 TGAACTGAATGGGTGCAGAAGCAGCCATGGTACGGAGGTAGTACATGCCGGTCTTGAGAC 1038107 Query 243801 CACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGGTCGT 243860 | |||| | || |||||||| || | ||| ||| | ||| Sbjct 1038106 CGAGCTTCCAGCCAGCGAAGTGCATGGATGTGATCTTGCCCATAGTAGGCT--------- 1038056 Query 243861 CCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGG 243920 ||| || || ||| |||||||| ||| |||| ||||| | || || |||| Sbjct 1038055 CCTT---CATGTGGATGTTCAGGGACTGAGACTGATCGATGAAGGCACCACGGTCAGCGG 1037999 Query 243921 CCATGGTGATGA-GGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGG 243979 |||| ||||| ||| | ||| || ||||| | | |||||||| | | ||||| Sbjct 1037998 CCATCTGGATGATGGTACG-CTGCGAGATCTCCCAGACGGTCTTGTACAGAGTCTTGATC 1037940 Query 243980 TGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGC 244039 | || |||| |||| ||| | || || | |||||| || | | Sbjct 1037939 TCGTCAGGGATGTTGGGGATGCGCTGAATGGAACCACCCTCAGCGATGATGCGGTTCTTC 1037880 Query 244040 ATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGA----CCAGGTGCCTGTTCAC 244095 ||||| ||| |||| || |||| | |||| ||| || ||||| | || || Sbjct 1037879 ATGTTCTCGGTCCAGAGACCCATGTCGACCAGGTCCTTGAGCAACCAGGGG----TTGAC 1037824 Query 244096 CACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTT-GCTGCTGAGCGGCTCGA 244154 ||||| ||||| || | ||||||||||| ||||| ||| | || || ||||||| Sbjct 1037823 AACCTGGAACTCACCAGCAAGCACGCGGCGAGAGTAGATGTTCGATGTGTAG-GGCTCGA 1037765 Query 244155 TGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCA 244214 || ||| ||||||| || ||||| | ||| ||||| |||||||||| || || | Sbjct 1037764 AGCACTCGTTGTTGCCGAGAATCTGGGAGGTGGAGGCAGTAGGCATGGGCGCGACGAGTA 1037705 Query 244215 GACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTG-AGCTCGTTCCAGTCCCACATG 244273 | ||| | || |||||| | | | | | || ||| | | ||||||||| | Sbjct 1037704 GCGAGTTGCGGACACCGTGC-TGAGCAATCTTCGCCTTCAGCGCCTCCCAGTCCCAAA-- 1037648 Query 244274 CCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACG 244333 || ||| | | |||| |||||||| |||| |||| ||| |||||| || | Sbjct 1037647 ---GATCGGT----GGGCTTGACGCCCCACAGGTCATACTGAAGCTCACCCTTGGAGATG 1037595 Query 244334 GGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCG 244393 || |||||| || ||| |||||| || || || | | ||| | Sbjct 1037594 GGCGAGCCCTCATATGTCTCGTAGGGGCCAAGCTCCTTAGCAATGTCGCAGGAGGAGGTC 1037535 Query 244394 AGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCG-CA 244452 | ||||||| ||||||||| ||||||||| || |||| | | ||||| | || Sbjct 1037534 AAAGCGGCGTGGTAGATGGTTTCGAAGATC------TTGATGTTGAGCTCCTTGGCTTCA 1037481 Query 244453 GGTGA-----AGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATG 244507 || || | || | || | | ||| | || || || ||||| || |||| Sbjct 1037480 GGAGACTCGAAAGGCAGGCGGAGAGCAAGGAAAGCATCAGCAAGACCCTGGACACCGAGA 1037421 Query 244508 CCGATGGGTCTGTGTCGCTTGTTGGAGCG-CATGGCTTCGGGCACGGGGTAAAAGTTGCC 244566 || ||||||||||| || |||| ||| | || || | | |||||||| |||| | Sbjct 1037420 CCAATGGGTCTGTGACGGAAGTTGCTGCGGCGTGCCTCCTCG-ACGGGGTAGTGGTTGAC 1037362 Query 244567 GTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAA 244626 ||||| | |||||||||||| || ||| | | ||||| ||| ||| ||| || Sbjct 1037361 CTCGATGATCTTGTTGAGGTTACGTGTGCAGACCTGAACGACATCGTGAAGCTTCTGGAA 1037302 Query 244627 GTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCT 244686 |||| ||||| | ||| | | || || || | ||| || || Sbjct 1037301 GTCGAACTCG----------CCGCGCTTGAAGTCA--ACGAAGGAGGGGAGAGCAACAGA 1037254 Query 244687 GGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAG 244746 ||||||||||||||| || ||||| || | ||||||| || || || ||||| || Sbjct 1037253 GGCCAGGTTGCAGACAGCGACCTCATCGGGAGCAGTGTACTCGATGATTTCAGTGCACAG 1037194 Query 244747 GTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTT 244806 ||| || |||||| || |||| || || ||| ||| |||| || ||||| Sbjct 1037193 GTTGGAGCTGCGGATGGTACCAAGGTTCTTCTGGTTGCTCTTCCTGTTGGCAGCATCCTT 1037134 Query 244807 GTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTC 244866 ||||||||||||||| ||||||||| ||| || |||| | | || |||||| | Sbjct 1037133 GTAGAGCATGAAGGGGTTACCGGTCTCGGTCTGAGCCTCGAGAATGGCGTACCAGAGCTT 1037074 Query 244867 CCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTC 244926 | ||| ||| ||| ||| |||||||| || |||||| ||||||||| | Sbjct 1037073 CTGAGCACGGACAGTCTCACGACCCTTGCCCGCTTTCTCGTACTTCTCGTACAGGGCGAC 1037014 Query 244927 GAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCA 244986 ||||||| || |||| || | ||||| |||||| ||||||||||| |||| Sbjct 1037013 GAACTCGTCACCGTAGACGTCAGCGAGGCCAGGGCACTCGTTGGGGCACATGAGTGTCCA 1036954 Query 244987 CTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAG 245046 ||||||| | || ||| | || ||||||||| ||||||||||| || || | |||||| Sbjct 1036953 CTCGCCGTTCTGCTGGACACGCTCCATGAAGAGATCGGGGATCCACAGAGCGTAGAAGAG 1036894 Query 245047 GTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGAC 245106 || | || | ||| ||| ||| ||||||||| || || | ||| | ||||| Sbjct 1036893 ATCGCGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTCCTGAGGTCGAGGAAGCCGAAGAC 1036834 Query 245107 GTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTG 245166 ||| ||||||| ||||| | ||||| |||| ||| ||||| ||||||||||| ||||| Sbjct 1036833 GTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCGGGGCGCTTGTTGCCACCCTG 1036774 Query 245167 GTCCACCATCCTCTCGAGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGT 245225 ||| || | | || | |||| ||| || || | || | | ||||| || Sbjct 1036773 GTCGACGTAGCGGGC-AGTGTTGTTGTAGACACGGAGCATGGGGATGAGACCGTTCGATG 1036715 Query 245226 GGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCC---TGAGGTTGCTGATGGACATGC 245282 |||||||| || |||||||| ||| || | | || ||| | | || | || Sbjct 1036714 TTCCGTTGGTTCCTCCGATGTAGGAGCCAGTGGCACGAATGCGGTGGACGTTG---AGGC 1036658 Query 245283 CTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCT 245342 | | |||||| || ||||||||| | |||||| |||||| ||||| ||||||| Sbjct 1036657 CAATTCCGCCAGCAGTCTTGGAGATCAACGCGCAGGTCTTGAGTGTGTCGTAGATGCCCT 1036598 Query 245343 CCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGC 245402 | ||||||||| |||||||| || || |||||||| |||| ||| ||| ||| ||| Sbjct 1036597 CGATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGACGACATCTGCGGCGAGGGTGTGC 1036538 Query 245403 ACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCT-CGAGAGGAACCCGTAC 245461 | |||||| || || || |||||| || ||||| | || ||| | | | |||| Sbjct 1036537 CGGCGTTGAAGAGCGTCGGCGAGGCGTGTGTGAAGTA-CTTCTGCGACATGTAGTCGTAT 1036479 Query 245462 GTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCACCTCATGAGGGTG 245521 |||| || ||||||| || |||||| | ||| | |||||| || Sbjct 1036478 GTCTCGATGGCCTTCTCGATGTCCTCCATGTGGATGCCGACGGCAACACGCATGAGCATG 1036419 Query 245522 TGCTG-GGGCGTCTCGATGGGTCCCTCGGGTCCCT--TGAGCATGTAGGAGCGCTCGAGC 245578 ||||| ||||| |||| | | || | || | ||||| ||| |||||||||||| Sbjct 1036418 TGCTGCGGGCG-CTCG--GCGACCTTGCCGTTGATGCGGAGCAGGTATGAGCGCTCGAGC 1036362 Query 245579 GTCTTGAACCCAAAGTACGAGTAGCCAAAGTCGGCGTGGTGCCTGACGGCTGCGTCGAGT 245638 |||||||| || ||| || |||| |||||| || || || ||| || ||| Sbjct 1036361 GTCTTGAAGCCGAAGAACTGGTAGTTGAAGTCGCGGTCGTAGACGATGGCGCTGTTGAG- 1036303 Query 245639 CTC-TCGGCGTGCTTCTGACTGACCTCGTAAAACTTTTGCGCTATGAGGGGAGCCCTGAG 245697 ||| ||||| || | ||| ||| || ||| | | || || | ||| | | | Sbjct 1036302 CTCATCGGCATGGTCCTGGATGATCTTGTAGACGCGGTCCGAGATCATGGG---CTGGTG 1036246 Query 245698 C---CCGGTGTCCGGATTGACGTTGAACCAGAGCCTCTTGCAC-ACCTCCGAGAACTTGG 245753 | ||| | | || ||||||| | || || || || || | ||||||| Sbjct 1036245 CTTGCCGTTCTTGGGGTTGACGTATTCGTACAG-GTCCTGGACGACGGCGGAGAACTGCT 1036187 Query 245754 GGCTGGTGAGCTTATGCAGGTTGGTGACTGCTATGCGCGCCGCCAACTTGCTGTAGTCGG 245813 | || |||| |||||||||| ||| || || ||||| || | || |||||| | Sbjct 1036186 TCTTCGTCTGCTTGTGCAGGTTGGAGACGGCGATACGCGCGGCGAGGATGGCGTAGTCCG 1036127 Query 245814 GGTGAGTGGTGGTCATGT 245831 | || ||||||||||||| Sbjct 1036126 GATGTGTGGTGGTCATGT 1036109 >seq14 Length=1191321 Score = 228 bits (252), Expect = 2e-54 Identities = 369/520 (71%), Gaps = 17/520 (3%) Strand=Plus/Plus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAAC 42691 ||||||||| ||||||||| |||||||| ||| |||||| | | || | | || Sbjct 900642 CCCTGCATCCGGAAGAAGGCCGACTGGGCTCTCCGATGGATCTCT-GACAAGAACTCCAC 900700 Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751 |||| | | | || || ||||| | ||||| ||||| ||||||||| || |||| Sbjct 900701 ATTCGCCAACCGCCTCGTCGCCTTCGCTGCCGTTGAGGGTATCTTCTTCAGTGGTTCCTT 900760 Query 42752 CGCCTCCATCTTCTGGCTCAAGCAGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACG 42810 ||| |||||||||||||| || || ||| || |||||||| ||||| ||||| |||| Sbjct 900761 CGCGTCCATCTTCTGGCTGAAAAAGCGTGGTCTC-ATGCCCGGTCTCACATTCTCCAACG 900819 Query 42811 AACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCC 42870 | |||||| | || ||||| |||| | || ||||||||| | |||| || | Sbjct 900820 AGCTCATCTCTCGTGATGAGGGCATGCACACAGATTTTGCCTGCTTGTTGTTTTCT---C 900876 Query 42871 ACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGA 42930 ||||| || ||| |||||| ||| ||| |||||||| ||||| || | Sbjct 900877 TCCTCAACAACCGTCCCAGCAAGGAGGCTGTCGAGGCTATCATCACCGAGGCTGTCACAA 900936 Query 42931 TCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCC-CTGGTCGGCATGAACCACGAC 42989 ||||| |||||||||| | | | || ||| ||| | ||| ||||||||||| | Sbjct 900937 TCGAGCAGGAGTTCCTGTCAGACGCTCTTCCC-TGTGCTCTGCTCGGCATGAACGCCACA 900995 Query 42990 CTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCAG 43048 |||||||| |||||||| ||| ||| || |||| ||| || || | ||| || Sbjct 900996 CTCATGTGTCAGTACATCGAGTTCGTTGCTGACCGTCTGCTCTTGGCCCTTGG----CAA 901051 Query 43049 CCGC---CTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGG 43105 || | ||||||| | | ||||||||| || ||||||||||| ||| | | || Sbjct 901052 CCCCAAGTACTACAACGCTACCAACCCCTTCGATTTCATGGAGAACATTTCGCTCGCCGG 901111 Query 43106 CAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 ||||||||| || ||||||||||| |||| ||||||||| Sbjct 901112 CAAGACCAATTTCTTCGAGAAGCGTGTCGGTGACTACCAG 901151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944336626675680