Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq4 109 5e-19 seq20 87.8 2e-12 seq13 87.8 2e-12 >seq4 Length=1699079 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| | || | |||||| || || || ||||| || || | | ||||| |||| Sbjct 982986 AAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTATAGTCGGAAAGCGTGCGACCGTC 982927 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | ||||||||||||| | ||||| || |||||||| ||||| || || || || || Sbjct 982926 TTCCAACTGCTTGCCGGCAAAGATGAGGCGTTGCTGGTCAGGAGGGATGCCCTCCTTATC 982867 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || |||||| || | || || | || || || || | || | ||| Sbjct 982866 CTGAATCTTAGACTTTACGTTGTCGATCGTGTCGCTGGACTCGACCTCCAATGTGATGGT 982807 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||||| | || || || ||||||||||| Sbjct 982806 CTTGCCGGTGAGGGTCTTGACAAAAATTTGCAT 982774 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||||| | || || ||||| | || || || || || |||||||| || | Sbjct 982545 ACCACCGCGCAGGCGCAGGACGAGATGCAGTGTGGACTCCTTCTGGATGTTGTAGTCGGA 982486 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| || | || ||||| |||||||| || |||| || |||||||| || ||||| Sbjct 982485 CAAGGTACGGCCATCCTCAAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGATCTGGAGG 982426 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || ||||| || || ||| || || | ||||| || || || Sbjct 982425 GATACCCTCCTTGTCTTGGATCTTCGACTTGACGTTGTCAATGGTATCGGAGGACTCGAC 982366 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCA 64421 || | ||| | |||||||||||||| Sbjct 982365 CTCGAGAGTGATGGTCTTGCCGGTCA 982340 >seq20 Length=976498 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||||| || || | || || || || || |||||||| || | Sbjct 715756 ACCACCACGCAGGCGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGA 715815 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || |||||| | || || |||||||||||||| | ||||| ||||||||||| || || Sbjct 715816 GAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGG 715875 Query 64336 AATTCCTTCTTTTTCT 64351 ||| || || || ||| Sbjct 715876 AATGCCCTCCTTGTCT 715891 >seq13 Length=1247346 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || |||||||| || | || |||||| |||| || |||||||||||| Sbjct 565583 GTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 565524 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||| | || | ||||||||||| || ||||| || || || || || || || Sbjct 565523 GCAAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTT 565471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499643438467920