Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq9 318 6e-82 >seq9 Length=1465676 Score = 318 bits (352), Expect = 6e-82 Identities = 1086/1668 (65%), Gaps = 32/1668 (2%) Strand=Plus/Plus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | | ||| | |||||| || || ||| || ||||| ||| || | ||| Sbjct 1036336 AACTACCAGTTCTTCGGCTTCAAGACGCTCGAGCGCTCATACCTGCTCCGCATCAACGGC 1036395 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | ||| ||||||| ||||| || |||| ||||| || ||| |||| || ||| | Sbjct 1036396 AAGGTCGCCGAGCGCCCGCAGCACATGCTCATGCGTGTTGCCGTCGGCATCCACATGGAG 1036455 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 ||||| ||| | | | | | | ||||| | | ||| | || ||| Sbjct 1036456 GACATCGAGAAGGCCATCGAGACATACGACTACATGTCGCAGAAGTACTTCACACACGCC 1036515 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT- 93953 | ||||| || |||||||| || || || ||| |||||||| || || ||||| || Sbjct 1036516 TCGCCGACGCTCTTCAACGCCGGCACACCCTCGCCGCAGATGTCGTCCTGCTTCCTCATC 1036575 Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013 ||| | |||| ||| |||| || || | ||||| |||||| ||| ||| || Sbjct 1036576 GAC-ATGAAGGAGGACAGCATCGAGGGCATCTACGACACACTCAAGACCTGCGCGTTGAT 1036634 Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTA 94073 ||| || || || ||||| || ||| |||||| | | ||||||| || ||||| Sbjct 1036635 CTCCAAGACTGCTGGCGGAATTGGCCTCAACGTCCACCGCATTCGTGCCACTGGCTCCTA 1036694 Query 94074 CATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAA 94133 |||| | || ||||| || || || ||||| ||| |||| |||||||| |||| |||||| Sbjct 1036695 CATCGGAGGAACCAACGGAACATCGAACGGTCTCATCCCCATGCTCCGTGTCTACAACAA 1036754 Query 94134 CGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCT 94193 | | || |||||||| ||||||||||| | | | ||| | ||||| |||| || Sbjct 1036755 CACTGCCCGCTACGTCGACCAGGGTGGCAACAAGCGCCCCGGTGCCTTCGCCATCTACCT 1036814 Query 94194 CGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGA 94253 |||||| |||||||| ||||| | ||| ||||||| | |||||||||||||| || Sbjct 1036815 CGAGCCATGGCACGCTGACGTCTTCGGCTTCCTCGACCTCAGGAAGAACCACGGCAAGGA 1036874 Query 94254 TCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACG 94313 || | ||| | || |||||||||||||| ||| | || || || || ||| | || Sbjct 1036875 GGAGGTTCGCGCCCGCGATCTCTTCTACGCTCTGTGGATCCCCGATCTCTTCATGGAGCG 1036934 Query 94314 CGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGA 94373 ||| || | ||| || |||| || | || ||||| || || || || || | || Sbjct 1036935 TGTCCAGCAGAACGGCGAGTGGACACTCATGTGCCCCAACGAGTGCCCTGGCCTCGCTGA 1036994 Query 94374 CGTTTGTGGATCGCG-TTTTGAAGACTTGTATGCTCGTTACGA-ATCGCAGGGCAAGGCC 94431 ||| | || | || || | | | |||| | ||||| | || |||||||| Sbjct 1036995 CGTCTACGG-TGACGAGTTCGTCGCCCTGTACGAGAAGTACGAGAAAGC-GGGCAAGGGT 1037052 Query 94432 AGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACG 94491 | || | | |||| |||||| ||| | || | || | ||| ||||| Sbjct 1037053 CGTGAGACTGTCCGTGCTCAGAAGCTCTGGTACGCCATTCTCGAGGCTCAGACCGAGACC 1037112 Query 94492 GGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTC 94551 |||| |||| ||| | | |||||| ||| |||| ||| ||||||| || |||| Sbjct 1037113 GGTAACCCCTTCATGCTCTACAAGGATGCTGCCAACAGGAAGAGCAACCAGAAGAACCTT 1037172 Query 94552 GGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAG 94611 || ||| ||||| || |||||||| || || ||||||| ||| |||| || ||| Sbjct 1037173 GGTACCATCCGCAGCTCCAACCTGTGCACTGAAATCATCGAGTACACTGCTCCCGATGAG 1037232 Query 94612 ATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACG 94671 | ||||| || ||||||| ||| | || || | ||||| || || || | Sbjct 1037233 GTCGCTGTCTGCAACCTGGCCTCTGTTGCTCTCCCCTCCTTCGT------TGACTTCAAG 1037286 Query 94672 TCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTTG-AA 94730 | || |||||| | || ||||| | ||| | | || | | || Sbjct 1037287 --CGCGGC-GAGTTCGACTTCCAGAAGCTTCACGATGTCG-TTCAGGTCTGCACACGTAA 1037342 Query 94731 CCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCA--AAC 94788 ||| |||| | | ||||| ||| |||||||||| |||||| | | || ||| Sbjct 1037343 CCTCAACAAGATCATCGAGGTCAACCACTACCCCGTCGAGGAGGC--ACGCCGCAGCAAC 1037400 Query 94789 CTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATG 94848 | || | ||||| || |||| ||||||||| | || || || | | | Sbjct 1037401 TTCCGTCACAGACCCATTGGTCTCGGTGTCCAGGGTCTTGCTGATGCTTTCCTTGCTCTC 1037460 Query 94849 CGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATT 94908 || ||||| | ||| ||| || || || | || | || || ||||||| ||| Sbjct 1037461 CGCCTGCCTTTCGAGTCTCCTGAAGCCAAGGAGCTCAACATCAAGATCTTCGAAACCATC 1037520 Query 94909 TATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACGAA 94968 || ||| || ||| ||| | || | || | ||| || || |||| Sbjct 1037521 TACCACGCCGCTTTGACCTCCTCCTGCGACATTGCTA---AGGAGCTTGGCCCCTACGAG 1037577 Query 94969 TCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAG 95028 | | || |||||| | |||| |||||| ||||| ||||| || ||| Sbjct 1037578 ACATATGAGGGCTCGCCCATCTCCAAGGGTGAGCTTCAGTATGACCTGTGGGGCGTCAAG 1037637 Query 95029 CCCTCGGGTCTGTACGACTGGGAAGCTCT--ACGCGCTGATGTTATCAAACACGGTGTGA 95086 ||| | | ||| | |||||||| || || | ||| ||| | || | |||||||| Sbjct 1037638 CCCACCGATCTTTGGGACTGGGAGGCGCTGAAGGCGAAGAT-TGCTC-AGCACGGTGTCC 1037695 Query 95087 AAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACA 95146 ||| |||| || || || |||||||| || |||||||| | ||||| || ||||||| Sbjct 1037696 GCAACTCGCTACTCGTCGCGCCCATGCCTACTGCCTCCACCTCCCAGATTCTCGGCAACA 1037755 Query 95147 ACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAAT 95206 |||||| ||||| |||| ||| || ||| | ||| | || ||||| || || || | Sbjct 1037756 ACGAGTGCTTCGAGCCCTACACATCGAACATCTACTCTCGCCGCGTGCTTGCTGGTGAGT 1037815 Query 95207 TCCCCGTCATCAACAAGCACCTCCTACGGGACCT-GACGTCTCTGGGTGTGTGGGGTGAC 95265 ||| || ||||| | || |||||| | || | ||||| | ||| || Sbjct 1037816 TCCAGGTTGTCAACCCCTGGTTGCTCAAGGACCTGGTCGAC-ATGGGTCTCTGGACCGAG 1037874 Query 95266 AAGGTCAAGAACCAACTGCTACGC-GCCAACGGCTCCGTCCAGAACATCCCGCAAATACC 95324 || | ||||||| | | ||| | || ||| | ||| |||||| | || || Sbjct 1037875 AACATGAAGAACC-GCATCATCGCTGAGGGTGGTTCCATTCAGCGCATCCCCAACATCCC 1037933 Query 95325 GGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG 95372 || || |||||| | || ||||||||||| ||||||||| ||||||| Sbjct 1037934 TGACGAGATCAAGACTCTGTACAAGACCGTCTGGGAGATCTCGCAGCG 1037981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494721851879280