Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq9 170 2e-37 seq14 129 6e-25 seq4 89.7 5e-13 >seq9 Length=1465676 Score = 170 bits (188), Expect = 2e-37 Identities = 566/869 (65%), Gaps = 15/869 (2%) Strand=Plus/Minus Query 153597 GCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCG 153656 |||| ||| ||||| || ||||| || ||| |||| | |||||| | ||| || Sbjct 1037261 GCAACAGAGGCCAGGTTGCAGACAGCGACCTCATCGGGAGCAGTGTACTCGATGATTTCA 1037202 Query 153657 GCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCAC 153716 | ||| |||||| || ||| || | || | ||| ||||| || | ||| Sbjct 1037201 GTGCACAGGTTGGAGCTGCGGATGGTACCAAGGTTCTTCTGGTTGCTCTTCCTGTTGGCA 1037142 Query 153717 GCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTA 153776 || || ||| |||||||| | || ||||||||| || | |||| || | || Sbjct 1037141 GCATCCTTGTAGAGCATGAAGGGGTTACCGGTCTCGGTCTGAGCCTCGAGAATGG-CGTA 1037083 Query 153777 TGC-AGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTA 153835 || | ||| || || || || ||| |||| | ||||||| |||||| Sbjct 1037082 CCAGAGCTTCTGAGCACGGACAGTCTCACGACCCTTGCCCGCTTTCTCGTACTTCTCGTA 1037023 Query 153836 CAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACAT 153895 ||| | |||||||| |||||| ||| |||||||| || |||| | || ||||| Sbjct 1037022 CAGGGCGACGAACTCGTCACCGTAGACGTCAGCGAGGCCAGGGCACTCGTTGGGGCACAT 1036963 Query 153896 CAGCGACCACATATCGT-CGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCG 153954 || | |||| ||| | || | ||| || |||||| ||||| || | ||| || | Sbjct 1036962 GAGTGTCCACTCGCCGTTCTGC-TGGACACGCTCCATGAAGAGATCGGGGATCCACAGAG 1036904 Query 153955 CGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGC--CCATGTTGCGTT-TCAGATTGA 154011 |||| | ||| ||||| || || | ||||| | || || | | | | || | || Sbjct 1036903 CGTAGAAGAGATCGCGGGC---GCGAACCTCCTCCTTGCCGTGGTTCTTCCTGAGGTCGA 1036847 Query 154012 GCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCT 154071 | | || ||| ||| |||||||| || || | ||||| ||| | |||||| |||| Sbjct 1036846 GGAAGCCGAAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCGGGGCGCT 1036787 Query 154072 TT---CCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCA 154128 | || ||||| ||||||| ||| | | |||||| |||| || | |||||| | Sbjct 1036786 TGTTGCCACCCTGGTCGACGTAGCGGGCAGTGTTGTTGTAGACACGGAGCATGGGGATGA 1036727 Query 154129 GGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCA 154188 | ||| | | || |||||||| ||| | | ||| ||| || | | || | Sbjct 1036726 GACCGTTCGATGTTCCGTTGGTTCCTCCGATGTAGGAGCCAGTGGCACGAATGCGGTGGA 1036667 Query 154189 CGTTAACGCCAATGCCGCC-GCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTG 154247 |||| | |||||| ||||| || || ||| || || |||||| || || | Sbjct 1036666 CGTTGAGGCCAATTCCGCCAGCAGT-CTTGGAGATCAACGCGCAGGTCTTGAGTGTGTCG 1036608 Query 154248 TAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGA 154307 |||||||| |||||||| || || | | ||| | ||| || || |||| ||||| Sbjct 1036607 TAGATGCCCTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGACGACATCTGCGGC 1036548 Query 154308 ATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATC 154367 | | || || || ||||| || || ||||| || || || || ||| Sbjct 1036547 GAGGGTGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGTGTGAAGTACTTCTGCGACATG 1036488 Query 154368 ATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGC 154427 | ||| || |||||||| | ||||| || || ||| ||||||| || || ||| Sbjct 1036487 TAGTCGTATGTCTCGATGGCCTTCTCGATGTCCTCCATGTGGATGCCGACGGCAACACGC 1036428 Query 154428 ATGAGCATGTGCTGCGGACGTTCGGCGAC 154456 ||||||||||||||||| || |||||||| Sbjct 1036427 ATGAGCATGTGCTGCGGGCGCTCGGCGAC 1036399 >seq14 Length=1191321 Score = 129 bits (142), Expect = 6e-25 Identities = 165/225 (73%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 52614 GAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGC 52673 ||||| || | ||||| ||||||| | | | ||| || || | ||||| ||| Sbjct 900924 GAGGCTGTCACAATCGAGCAGGAGTTCCTGTCAGACGCTCTTCCCTGTGCTCTGCTCGGC 900983 Query 52674 ATGAACG-CGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCA 52732 ||||||| | || | |||||| ||||||||||||| || || || |||||| | || Sbjct 900984 ATGAACGCCACACT-CATGTGTCAGTACATCGAGTTCGTTGCTGACCGTCTGCTCTTGGC 901042 Query 52733 GCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTC 52792 || || | || ||||||| ||||||| ||| || || || || ||| | |||||||| Sbjct 901043 CCTTGGCAACCCCAAGTACTACAACGCTACCAACCCCTTCGATTTCATGGAGAACATTTC 901102 Query 52793 GCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||| | ||||||||||| || ||||||||||| ||||| || || Sbjct 901103 GCTCGCCGGCAAGACCAATTTCTTCGAGAAGCGTGTCGGTGACTA 901147 >seq4 Length=1699079 Score = 89.7 bits (98), Expect = 5e-13 Identities = 125/172 (73%), Gaps = 4/172 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||| ||| || |||||| |||||||| || || |||| Sbjct 982227 GACTCCTTCTGAATGTTGTAATCGGACAAAGTACGACCATCCTCGAGCTGCTTGCCGGCG 982168 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTT--TGTTTTA 138538 |||| | ||||| ||||| || || || ||||| ||||| ||| | || | || Sbjct 982167 AAGATCAAGCGCTGCTGGTCTGGGGGGATGCCTTCCTTGTC-CTGAATCTTGCTCTTGAC 982109 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGT 138590 |||| || | ||||||| ||||||||||| | || | ||| ||||| || Sbjct 982108 ATTG-TCGATAGTGTCGGATGACTCCACCTCAAGGGTGATCGTCTTACCGGT 982058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261047684960