Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq4 113 4e-20 seq14 98.7 9e-16 >seq4 Length=1699079 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | || || || || ||||||||||| || Sbjct 982772 CCACCACGGAGACGGAGCACCAAGTGGAGTGTGGATTCCTTCTGAATATTGTAGTCCGAG 982713 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| |||||||| || |||||| |||| | || |||||||| || || Sbjct 982712 AGTGTGCGACCATCCTCTAGCTGCTTACCAGCGAAGATAAGGCGTTGCTGATCAGGGGGG 982653 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| ||||||||| || || ||||| | |||| ||||| | ||| || Sbjct 982652 ATGCCTTCCTTGTCCTGAATCTTGCTCTTGACATTGTCGATAGTGTCGGATGACTCCACC 982593 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | ||| |||||||| || || || || || |||||||| Sbjct 982592 TCAAGGGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 982546 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| || | ||| | || ||||| || || || ||||| ||| | Sbjct 982544 CCACCGCGCAGGCGCAGGACGAGATGCAGTGTGGACTCCTTCTGGATGTTGTAGTCGGAC 982485 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || || || || |||||| | |||| ||||||||||| ||||| Sbjct 982484 AAGGTACGGCCATCCTCAAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGATCTGGAGGG 982425 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || ||||||||||| ||| ||| ||||| |||| || | ||| || | |||||| Sbjct 982424 ATACCCTCCTTGTCTTGGATCTTCGACTTGACGTTG-TCAATGGTATCGGAGGACTCGAC 982366 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCA 127091 |||| || | || |||||||||| Sbjct 982365 CTCGAGAGTGATGGTCTTGCCGGTCA 982340 Score = 98.7 bits (108), Expect = 9e-16 Identities = 165/235 (70%), Gaps = 3/235 (1%) Strand=Plus/Minus Query 126880 TACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTA 126939 ||||| |||||| || | || | |||||| || | ||| ||||| || || || || || Sbjct 983006 TACTG-TCCACCACGAAGACGAAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTATA 982948 Query 126940 ATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATC 126999 ||| | ||||||| || || | ||| || || || |||| | || ||||| || Sbjct 982947 GTCGGAAAGCGTGCGACCGTCTTCCAACTGCTTGCCGGCAAAGATGAGGCGTTGCTGGTC 982888 Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTAC 127058 ||||| ||||||||||| ||| || || ||| | |||| |||| ||||| | Sbjct 982887 AGGAGGGATGCCCTCCTTATCCTGAATCTTAGACTTTACGTTG-TCGATCGTGTCGCTGG 982829 Query 127059 TCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||||| || | || | || |||||||| || || || |||||||| ||||| Sbjct 982828 ACTCGACCTCCAATGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAAATTTGCAT 982774 >seq14 Length=1191321 Score = 98.7 bits (108), Expect = 9e-16 Identities = 289/444 (65%), Gaps = 25/444 (6%) Strand=Plus/Plus Query 47146 TCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACA 47205 |||| ||||| ||| ||||| |||||||| || ||| ||| | || || | Sbjct 900718 TCGCCTTCGCTGCCGTTGAGGGTATCTTCTTCAGTGGTTCCTTCGCGTCCATCTTCTGGC 900777 Query 47206 TGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACG 47265 |||||| || | |||||||| ||||| || ||||||||| ||||| | || | Sbjct 900778 TGAAAAAGCGTGGTCTCATGCCCGGTCTCACATTCTCCAACGAGCTCATCTCTCGTGATG 900837 Query 47266 AAGGCCTGCACACCAACTTTGCCTG----------TCTCTACTACAACACTAGAGTCG-A 47314 | ||| ||||||| | |||||||| ||||| || ||||| | ||| | Sbjct 900838 AGGGCATGCACACAGATTTTGCCTGCTTGTTGTTTTCTCTCCT-CAACA--ACCGTCCCA 900894 Query 47315 TCAAAAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGAT 47374 ||| ||| | | ||| | || | |||| || ||| | || ||| Sbjct 900895 GCAA-----GGAGG------CTGTCGAGGCTATCATCACCGAGGCTGTCACAATCGAGCA 900943 Query 47375 GGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAG 47434 |||||| | | || ||||| ||| || | | || |||||||| | ||| | Sbjct 900944 GGAGTTCCTGTCAGACGCTCTTCCCTGTGCTCTGCTCGGCATGAACGCCACACTCATGTG 901003 Query 47435 AAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTA 47494 |||||||||| || || || ||||| |||||| | || | |||||| || Sbjct 901004 TCAGTACATCGAGTTCGTTGCTGACCGTCTGCTCTTGGCCCTTGGCAACCCCAAGTACTA 901063 Query 47495 CCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTT 47554 | || | || || ||||| || ||| | ||||||||||||| ||||||||||| || Sbjct 901064 CAACGCTACCAACCCCTTCGATTTCATGGAGAACATTTCGCTCGCCGGCAAGACCAATTT 901123 Query 47555 TTTCGAGAAGCGCGTCGGCGAATA 47578 ||||||||||| ||||| || || Sbjct 901124 CTTCGAGAAGCGTGTCGGTGACTA 901147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475499504260320