Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq9 138 1e-27 seq4 91.5 1e-13 >seq9 Length=1465676 Score = 138 bits (152), Expect = 1e-27 Identities = 554/866 (64%), Gaps = 15/866 (2%) Strand=Plus/Plus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCAC--GGAC 122955 ||||||||||| || || || ||||||||||| || || | ||| | ||| ||| Sbjct 1036396 AAGGTCGCCGAGCGCCCGCAGCACATGCTCATGCGTGTTGCCGTCGGCATCCACATGGA- 1036454 Query 122956 GCGACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACG 123015 |||||||| || || | ||| || ||||| | ||||| || || | ||||| |||| Sbjct 1036455 -GGACATCGAGAAGGCCATCGAGACATACGACTACATGTCGCAGAAGTACTTCACACACG 1036513 Query 123016 CGAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGC 123075 | || || | ||| ||||||||| | ||| ||| |||| || || || | Sbjct 1036514 CCTCGCCGACGCTCTTCAACGCCGGCACACCCTCGCCGCAGATGTCGTCCTGCTTCCTCA 1036573 Query 123076 TCACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGA-TTGCGCGTTG 123134 || | || || ||||||||| || ||||| || || | | || ||||||||| Sbjct 1036574 TCGACATGAAGGAGGACAGCATCGAGGGCATCTACGACACACT-CAAGACCTGCGCGTTG 1036632 Query 123135 ATTTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGC 123194 || ||||| || ||||| || ||| | ||||| ||| | | | | | || | Sbjct 1036633 ATCTCCAAGACTGCTGGCGGAATTGGCCTCAACGTCCACCGCATTCGTGCCACTGGCTCC 1036692 Query 123195 CGCATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAAT 123254 |||| || | ||| |||||| | ||| ||| ||||||| || || ||||| Sbjct 1036693 TACATCGGAGGAACCAACGGAACATCGAACGGTCTCATCCCCATGCTCCGTGTCTACAAC 1036752 Query 123255 AACGCCGTGCGGCACGTCGACCAGGGCGG---CAAACGCAAAGGCGCGATGGCGATCTAT 123311 ||| | | || ||||||||||||| || ||| ||| || || | || ||||| Sbjct 1036753 AACACTGCCCGCTACGTCGACCAGGGTGGCAACAAGCGCCCCGGTGCCTTCGCCATCTAC 1036812 Query 123312 CTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCG 123371 || || || ||||||| ||| || | || || | | | | ||| || | Sbjct 1036813 CTCGAGCCATGGCACGCTGACGTCTTCGGCTTCCTCGACCTCAGGAAGAACCACGGCAAG 1036872 Query 123372 GAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGA 123431 || || ||||||||| | || |||||| | ||| | |||||| | || ||| Sbjct 1036873 GAGGAGGTTCGCGCCCGCGATCTCTTCTACGCTCTGTGGATCCCCGATCTCTTCATGGAG 1036932 Query 123432 CGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGAGC 123491 || || | | |||||| |||| | |||||||| ||| | ||| || ||| | Sbjct 1036933 CGTGTCCAGCAGAACGGCGAGTGGACACTCATGTGCCCCAACGAGTGCCCTGGCCTCGCT 1036992 Query 123492 GACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAACAG 123551 ||||| ||||| | |||| | || |||||| | | |||||| | |||| || Sbjct 1036993 GACGTCTACGGTGACGAGTTCGTCGCCCTGTACGAGAAGTACGAGAAAGCGGGCA---AG 1037049 Query 123552 GTTAGTCAG---GTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTCGAA 123608 | | || || || | || | | | | | ||| |||| | || ||| Sbjct 1037050 GGTCGTGAGACTGTCCGTGCTCAGAAGCTCTGGTACGCCATTCTCGAGGCTCAGACCGAG 1037109 Query 123609 ACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAAC 123668 ||||| | || | |||||||||||| || || ||||||||| | ||| |||| ||| Sbjct 1037110 ACCGGTAACCCCTTCATGCTCTACAAGGATGCTGCCAACAGGAAGAGCAACCAGAAGAAC 1037169 Query 123669 TTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCCGAT 123728 | || || || | || || ||| | ||||| ||||| |||| | | ||||| Sbjct 1037170 CTTGGTACCATCCGCAGCTCCAACCTGTGCACTGAAATCATCGAGTACACTGCTCCCGAT 1037229 Query 123729 CAAGTGGCCGTGTGTAATTTGGCTTC 123754 | || || || || || |||| || Sbjct 1037230 GAGGTCGCTGTCTGCAACCTGGCCTC 1037255 >seq4 Length=1699079 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 |||||||| || ||||| ||||| ||||| ||| | || | || ||||| || Sbjct 982976 TGCAGCGTCGACTCCTTCTGGATGTTATAGTCGGAAAGCGTGCGACCGTCTTCCAACTGC 982917 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | || | ||||||||||| || || ||||| || ||||| ||||| || Sbjct 982916 TTGCCGGCAAAGATGAGGCGTTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGAATCTTA 982857 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 || | || | || | |||||| |||||||| || | || | || |||||||| Sbjct 982856 GACTTTA-CGTTGTCGATCGTGTCGCTGGACTCGACCTCCAATGTGATGGTCTTGCCGGT 982798 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 || || || |||||||||||||| Sbjct 982797 GAGGGTCTTGACAAAAATTTGCAT 982774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452001968291280