Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq9 203 4e-47 seq14 104 3e-17 >seq9 Length=1465676 Score = 203 bits (224), Expect = 4e-47 Identities = 1118/1766 (63%), Gaps = 37/1766 (2%) Strand=Plus/Minus Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585 |||||||||||||| | ||| | | |||||||||||||| || |||||||| | Sbjct 1038166 TGAACTGAATGGGTGCAGAAGCAGCCATGGTACGGAGGTAGTACATGCCGGTCTTGAGAC 1038107 Query 115586 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 115645 | |||||||| || | ||||| || | | |||| | || || | |||| Sbjct 1038106 CGAGCTTCCAGCCAGCGAAGTGCATGGATGTGATCTTGCCCATAGTAGGCTCCTTCATGT 1038047 Query 115646 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 115705 || ||||| || || |||||||||||| || || || || ||||| | || | Sbjct 1038046 GGATGTTCAGGGACTGAGACTGATCGATGAAGGCACCACGGTCAGCGGCCATCTGGATGA 1037987 Query 115706 CATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATAT 115765 | | ||| ||||| || || |||| || |||| || || || ||||| | Sbjct 1037986 TGGTACGCTGCGAGATCTCCCAGACGGTCTTGTACAGAGTCTTGATCTCGTCAGGGATGT 1037927 Query 115766 CCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGAGATCCTTCATATCCTTTGACC 115825 ||| || || || ||||| | || ||| | | |||||| | || | || Sbjct 1037926 TGGGGATGCGCTGAATGGAACCACCCTCAGCGATGATGCGGTTCTTCATGTTCTCGGTCC 1037867 Query 115826 AGAGACCAATCTTCTTGAGATCCT----CCACGAGGTGCTTATTGACAACAACAAACTCA 115881 ||||||| || | || |||| | || ||| | |||||||| |||||| Sbjct 1037866 AGAGACCCATGTCGACCAGGTCCTTGAGCAACCAGGGG----TTGACAACCTGGAACTCA 1037811 Query 115882 CCCGCGAGGGTGCGTCTCAGA-TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTT 115940 || || || ||| | ||| |||||||| | ||||| ||||| |||||||| ||||| Sbjct 1037810 CCAGCAAGCACGCGGC-GAGAGTAGATGTTCGATGTGTAGGGCTCGAAGCACTCGTTGTT 1037752 Query 115941 ACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAG 116000 || | || |||| |||||||| || |||||||| || | ||| || |||||||| Sbjct 1037751 GCCGAGAATCTGGGAGGTGGAGGCAGTAGGCATGGGCGCGACGAGTAGCGAGTTGCGGAC 1037692 Query 116001 ACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGC-TTTGTCTCCC 116059 ||| | ||| |||| || || |||||||| | || | | | || Sbjct 1037691 ACCGTGCTGAGCAATCTTCGCCTTCAGCGCCTCCCAGTCCCA-AAGATCGGTGGGCTTGA 1037633 Query 116060 CCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCAT 116119 | |||||| ||| |||| || ||| | ||| ||||| |||||| ||||||| | Sbjct 1037632 CGCCCCACAGGTCATACTGAAGCTCACCCTTGGAGATGGGCGAGCCCTCATATGTCTCGT 1037573 Query 116120 ATGGGCCCTCAACCTCC---GCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTG 116176 | |||| ||| |||| || | ||| || | | || ||||| || || | Sbjct 1037572 AGGGGC---CAAGCTCCTTAGCAATGTCGCAGGAGGAGGTCAAAGCGGCGTGGTAGATGG 1037516 Query 116177 TCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACA 116236 | || || || || | ||||||| || || || || | || ||| Sbjct 1037515 TTTCGAAGATCTTGATGTTGAGCTCCTTGGCTTCAGGAGACTCGAAAGGCAGGCGGAGAG 1037456 Query 116237 AAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAG 116296 || || |||| || ||||| ||||||||||| ||||| || | || | | || Sbjct 1037455 CAAGGAAAGCATCAGCAAGACCCTGGACACCGAGACCAATGGGTCTGTGACGGAAGTTGC 1037396 Query 116297 ACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGG 116356 || || ||| ||||| || || ||||| | | | || || || | Sbjct 1037395 TGCGGCGTGCCTCCTCGACGGGGTAGTGGTTGACCTCGATGATCTTGTTGAGGTTACGTG 1037336 Query 116357 TGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGA 116416 || |||| || || |||||||| | | | || |||| || | ||| | | Sbjct 1037335 TGCAGACCTGAACGACATCGTGAAGCTTCTGGAAGTC-GAACT-CGCCGCGCTTGA-AGT 1037279 Query 116417 CATACTTAGGA----AGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA 116472 || || |||| || || | || ||||| || || |||| | |||||| | || Sbjct 1037278 CA-ACGAAGGAGGGGAGAGCAACAGAGGCCAGGTTGCAGACAGCGACCTCATCGGGAGCA 1037220 Query 116473 GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 116532 |||||||| || ||||| || |||| || || || ||||| || | |||||| || Sbjct 1037219 GTGTACTCGATGATTTCAGTGCACAGGTTGGAGCTGCGGATGGTACCAAGGTTCTTCTGG 1037160 Query 116533 TTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGG 116592 || ||| |||| ||||||||||||||||| | || | || ||||| || || Sbjct 1037159 TTGCTCTTCCTGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTACCGGTCTCGGTCTGA 1037100 Query 116593 GACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTC 116651 | || |||||| || | ||| | | || | || | ||||| | | ||| | Sbjct 1037099 GCCTCGAGAATGGCGTACCAGAGCTTCTG-AGCACGGACAGTCTCACGACCCTTGCCCGC 1037041 Query 116652 CTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGG 116711 | ||||||||| ||| ||||| | ||||| ||||| | || | ||| || || Sbjct 1037040 TTTCTCGTACTTCTCGTACAGGGCGACGAACTCGTCACCGTAGACGTCAGCGAGGCCAGG 1036981 Query 116712 TGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAG 116771 || | || || | ||| | ||| | || || || || |||| ||||||||| Sbjct 1036980 GCACTCGTTGGGGCACATGAGTGTCCACTCGCCGTTCTGCTGGACACGCTCCATGAAGAG 1036921 Query 116772 GTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATT 116831 || |||||||| || || |||||||||| || |||| | || || | || || || Sbjct 1036920 ATCGGGGATCCACAGAGCGTAGAAGAGATCGCGGGCGCGAACCTCCTCCTTGCCGTGGTT 1036861 Query 116832 GAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGAT 116891 | | || | ||| | | || || |||||||| || || ||||| | |||| Sbjct 1036860 CTTCCTGAGGTCGAGGAAGCCGAAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAA 1036801 Query 116892 TGACCCCTTGCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCG 116948 | || ||| ||| |||||| || || | || || ||| | || || Sbjct 1036800 GGCACCGGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGGGCAGTGTTGTTGTAGACACG 1036741 Query 116949 AAGCATTGGAATGATACCATCAGATTGGCCATTTG-TCCCCCGA-ATACGAGACTTGTTG 117006 ||||| || |||| ||| | ||| || || | ||| |||| || ||| | || Sbjct 1036740 GAGCATGGGGATGAGACCGTTCGATGTTCCGTTGGTTCCTCCGATGTAGGAGCC--AGTG 1036683 Query 117007 GCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCAC 117066 || | | ||||| || | ||||| || || || ||| ||||| ||||| Sbjct 1036682 GCACGAATGCGGTGGACGTTGAGGCCAATTCCGCCAGCAGTCTTGGAGATCAACGCGCAG 1036623 Query 117067 TCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAG 117126 | |||| || ||||||| || ||||| ||| |||| | |||||||||||||| Sbjct 1036622 GTCTTGAGTGTGTCGTAGATGCCCTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCAG 1036563 Query 117127 CTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 117186 |||||| || ||| ||||| || ||||||||||| || || | ||||| |||| Sbjct 1036562 GACGACATCTGCGGCGAGGGTGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGTGTGAA- 1036504 Query 117187 ATACCT-TGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAAT 117245 ||| | || ||||| | ||||| ||||| | | | ||||| ||| ||| || Sbjct 1036503 GTACTTCTGCGACATGTAGTCGTATGTCTCGATGGCCTTCTCGATGTCCTCCATGTGGAT 1036444 Query 117246 ACCGATTGAGACCCGCATAAACATGT 117271 |||| | || ||||| | ||||| Sbjct 1036443 GCCGACGGCAACACGCATGAGCATGT 1036418 >seq14 Length=1191321 Score = 104 bits (114), Expect = 3e-17 Identities = 279/421 (66%), Gaps = 8/421 (2%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| ||||| |||||||||||||| || ||||| || |||| || |||||||| Sbjct 901148 GTAGTCACCGACACGCTTCTCGAAGAAATTGGTCTTGCCGGCGAGCGAAATGTTCTCCAT 901089 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCA--AATTGTTGGCACCCCAATCTGTTTGAGGAGA 127348 ||||| || ||||| | | ||| | | ||| || |||| ||| ||| Sbjct 901088 GAAATCGAAGGGGTTGGTAGCGTTGTAGTACTTG--GGGTTGCCAAGGGCCAAGAGCAGA 901031 Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408 || || | ||| |||| ||||||| | |||| | |||||| |||| || | Sbjct 901030 CGGTCAGCAACGAACTCGATGTACTGACACATGAGTGTGGCGTTCATGCCGAGCAGAGCA 900971 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 || || || ||||| | | |||| ||| ||| || ||||| || | ||| || Sbjct 900970 CAGGGAAGAGCGTCTGACAGGAACTCCTGCTCGATTGTGACAGCCTCGGTGATGATAGCC 900911 Query 127469 TGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCA-CAG-CAAACT 127526 | | || ||| | || | ||| | || ||| | | | ||| |||| | Sbjct 900910 TCGACAGCCTCCTTGCTGGGACGGTTG--TTGAGGAGAGAAAACAACAAGCAGGCAAAAT 900853 Query 127527 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 127586 || ||| | ||||| ||||| |||||||| || || ||||| ||||| ||||||| Sbjct 900852 CTGTGTGCATGCCCTCATCACGAGAGATGAGCTCGTTGGAGAATGTGAGACCGGGCATGA 900793 Query 127587 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 127646 |||| ||||| |||| |||||| || | || || ||| ||||||||| ||||| | Sbjct 900792 GACCACGCTTTTTCAGCCAGAAGATGGACGCGAAGGAACCACTGAAGAAGATACCCTCAA 900733 Query 127647 C 127647 | Sbjct 900732 C 900732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613505528192880