Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq9 138 2e-27 >seq9 Length=1465676 Score = 138 bits (152), Expect = 2e-27 Identities = 334/495 (67%), Gaps = 8/495 (2%) Strand=Plus/Minus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACG-GCAGGCCTGCTTCTCAGATAGTACATGC 203897 || ||| || ||||||||||||| || || |||| | || | | || |||||||||| Sbjct 1038177 CTGGTCGACAGTGAACTGAATGG-GTGCAGAAGCAGCCATGGTACGGAGGTAGTACATGC 1038119 Query 203898 CGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGG 203957 ||||||| || || || ||| || | ||||||||| | | |||| || | | Sbjct 1038118 CGGTCTTGAGACCGAGCTTCCAGCCAGCGAAGTGCATGGATGTGATCTTGCCCATAGTAG 1038059 Query 203958 GGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCG 204016 | || |||||| |||||||| ||||| || |||||| ||||| || || || ||| Sbjct 1038058 GCTCCTTCATGTGGATGTTCAGGGACTGAGACTGATCGATG-AAGGCACCACGGTCAGCG 1038000 Query 204017 GCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA-CGTCTCTGGT 204075 ||||| | ||| ||||| |||||| |||||||| || |||||| ||| |||| || | Sbjct 1037999 GCCATCTGGATGATGGTACGCTGCGAGATCTCCCAGACGGTCTTGTACAGAGTCT-TGAT 1037941 Query 204076 GTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCC 204134 | | ||| | | | | | ||| || || || || || || | | || Sbjct 1037940 CTCGTCAGGGATGT-TGGGGATGCGCTGAATGGAACCACCCTCAGCGATGATGCGGTTCT 1037882 Query 204135 TCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGA 204194 || | | ||| ||| | |||| || ||| ||| | || |||||||| | Sbjct 1037881 TCATGTTCTCGGTCCAGAGACCCATGTCGACCAGGTCCTTGAGCAACCAGGGGTTGACAA 1037822 Query 204195 TCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACG 204254 ||| || || || | ||||| | || | | | | ||| ||| | || ||||| Sbjct 1037821 CCTGGAACTCACCAGCAAGCACGCGGCGAGAGTAGATGTTCGATGTGTAGGGCTCGAAGC 1037762 Query 204255 CCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGG 204314 |||||||||||||| |||||| | |||| ||| || |||||||| || | ||| || | Sbjct 1037761 ACTCGTTGTTGCCGAGAATCTGGGAGGTGGAGGCAGTAGGCATGGGCGCGACGAGTAGCG 1037702 Query 204315 AGTTGCGCACACCGT 204329 ||||||| ||||||| Sbjct 1037701 AGTTGCGGACACCGT 1037687 Score = 129 bits (142), Expect = 9e-25 Identities = 367/549 (67%), Gaps = 14/549 (3%) Strand=Plus/Minus Query 205060 CTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACA 205119 |||||| || |||||| || || || || |||||| ||||| || || || || Sbjct 1037037 CTCGTACTTCTCGTACAGGGCGACGAACTCGTCACCGTAGACGTCAGCGAGGCCAGGGCA 1036978 Query 205120 TTTTTTGGGACACATCAGAGACCACAT-CTGATCGTCTTTCACCCTCTCCATAAACAGGT 205178 | ||||| ||||| || | |||| | | || || || | |||||| || || | Sbjct 1036977 CTCGTTGGGGCACATGAGTGTCCACTCGCCGTTCTGCTGG-ACACGCTCCATGAAGAGAT 1036919 Query 205179 CGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCT 205238 || ||||||||| |||| || ||||| ||||| | || | || | || |||||| Sbjct 1036918 CGGGGATCCACAGAGCGTAGAAGAGATCGCGGGCGCGAACCTCCTCCTTGCCGTGGTTCT 1036859 Query 205239 TTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATT 205297 | | | ||| || |||||| | | ||| |||||||| ||||| | | | ||| | Sbjct 1036858 TCCTGAGGTCGAGG-AAGCCGAAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAG 1036800 Query 205298 GCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGC 205357 || || || | |||||| ||||||||||| || ||| | | |||| | || || Sbjct 1036799 GCACCGGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGGGCAGTGTTGTTGTAGACACGG 1036740 Query 205358 AGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCC 205417 ||||| || | |||||||| | || ||||| || | |||| ||||| || Sbjct 1036739 AGCATGGGGATGAGACCGTTCGATGTTCCGTTGGTTCCTCCGATGTAGGAGCCAGTGGCA 1036680 Query 205418 CTCA--CGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCA-C 205474 | | || |||| | | |||||| ||||||| | ||||| |||| ||||| Sbjct 1036679 CGAATGCGGTGGACGTTG--AGGCCAATTCCGCCAGCAGTCTTGGAGATCAACGCGCAGG 1036622 Query 205475 TCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTC-ACCAGATAGCA 205533 ||||| || ||| ||||||||| ||||| || ||| || |||| | || |||| Sbjct 1036621 TCTTG-AGTGTGTCGTAGATGCCCTCGATGCTGTCCTCCTTCA-TGTCGATGAGGAAGCA 1036564 Query 205534 CGAAGCCAGCT-TGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGA 205592 || | || || ||| | | | ||||| |||| ||||||||| || |||||| ||| Sbjct 1036563 GGACGACATCTGCGGCGAGGGT-GTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGTGTGA 1036505 Query 205593 AGCGCTTCT 205601 || ||||| Sbjct 1036504 AGTACTTCT 1036496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795153033202080