Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq4 132 1e-25 seq20 111 4e-19 seq13 100 7e-16 >seq4 Length=1699079 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| || ||||||||||| |||| ||| ||||| | | || Sbjct 982994 CGAAGACGAAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTATAGTCGGAAAGCGTG 982935 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||||| |||||| ||||| |||||||| || |||||||| ||| || || Sbjct 982934 CGACCGTCTTCCAACTGCTTGCCGGCAAAGATGAGGCGTTGCTGGTCAGGAGGGATGCCC 982875 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||| ||| |||| ||||| | | || || ||||| Sbjct 982874 TCCTTATCCTGAATCTTAGACTTTACGTTGTCGATCGTGTCGCTGGACTCGACCTCCAAT 982815 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| || || ||||||||||| Sbjct 982814 GTGATGGTCTTGCCGGTGAGGGTCTTGACAAAAATTTG 982777 Score = 129 bits (142), Expect = 1e-24 Identities = 148/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| ||||| ||||| |||||||| || | |||||| || | |||||| Sbjct 982254 CGAAGGCGGAGGACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCGGACAAAGTA 982195 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| ||||||||||| | ||||||||||| || || ||| Sbjct 982194 CGACCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGGATGCCT 982135 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||| || |||| ||||| | || || || || | Sbjct 982134 TCCTTGTCCTGAATCTTGCTCTTGACATTGTCGATAGTGTCGGATGACTCCACCTCAAGG 982075 Query 199589 GTGATCGTCTTACCCGTGA 199607 |||||||||||||| |||| Sbjct 982074 GTGATCGTCTTACCGGTGA 982056 Score = 93.3 bits (102), Expect = 1e-13 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | |||||| || || ||||| || | |||||||| | | || | ||||| Sbjct 982757 AGCACCAAGTGGAGTGTGGATTCCTTCTGAATATTGTAGTCCGAGAGTGTGCGACCATCC 982698 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || |||||||| || || ||||| || || || ||||| ||| Sbjct 982697 TCTAGCTGCTTACCAGCGAAGATAAGGCGTTGCTGATCAGGGGGGATGCCTTCCTTGTCC 982638 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| || |||| ||||| | || || || || | ||||||||| Sbjct 982637 TGAATCTTGCTCTTGACATTGTCGATAGTGTCGGATGACTCCACCTCAAGGGTGATCGTC 982578 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || || || || Sbjct 982577 TTGCCGGTGAGGGTCTTGACGAAGATCTG 982549 Score = 89.7 bits (98), Expect = 1e-12 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| || || || || |||||||| |||| ||||||||| | ||| || Sbjct 982538 CGCAGGCGCAGGACGAGATGCAGTGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTA 982479 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || || ||||| || ||||| || ||||||||||| || ||| || || Sbjct 982478 CGGCCATCCTCAAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGATCTGGAGGGATACCC 982419 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| ||| ||| || | ||| || | | || || || | Sbjct 982418 TCCTTGTCTTGGATCTTCGACTTGACGTTGTCAATGGTATCGGAGGACTCGACCTCGAGA 982359 Query 199589 GTGATCGTCTTACCCGT 199605 ||||| ||||| || || Sbjct 982358 GTGATGGTCTTGCCGGT 982342 Score = 86.0 bits (94), Expect = 1e-11 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 ||||||||||| |||||| | || ||||| | |||||| ||||||||||| | ||||| Sbjct 982163 ATCTTCGCCGGCAAGCAGCTCGAGGATGGTCGTACTTTGTCCGATTACAACATTCAGAAG 982222 Query 200998 GAGTCTACTCTTCACCTTGT 201017 ||||| ||||||||||| || Sbjct 982223 GAGTCCACTCTTCACCTCGT 982242 >seq20 Length=976498 Score = 111 bits (122), Expect = 4e-19 Identities = 85/101 (84%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||||||||| |||||||| |||| ||||||||| | | || | ||||| Sbjct 715772 AGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCC 715831 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 || |||||||| ||||||||||||||||||||||||||||| Sbjct 715832 TCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGG 715872 >seq13 Length=1247346 Score = 100 bits (110), Expect = 7e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| |||||||||||||||||||| |||| ||||||||| | | || | || || Sbjct 565598 AGGACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 565539 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| ||||| ||||| | |||||||||||||| ||| || || ||| Sbjct 565538 TCGAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 565479 Query 199538 TGAATCTT 199545 || ||||| Sbjct 565478 TGGATCTT 565471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178918307124606