Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq4 132 5e-26 seq13 120 3e-22 seq20 98.7 1e-15 >seq4 Length=1699079 Score = 132 bits (146), Expect = 5e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||| |||| || |||||| ||||| || |||||||| || ||||| | Sbjct 982989 ACGAAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTATAGTCGGAAAGCGTGCGACC 982930 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || | |||||||||||| || || | ||| |||||||| | || | || |||||| Sbjct 982929 GTCTTCCAACTGCTTGCCGGCAAAGATGAGGCGTTGCTGGTCAGGAGGGATGCCCTCCTT 982870 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 ||| ||||| ||| | ||| | | | ||||||||| || || || |||| |||| Sbjct 982869 ATCCTGAATCTTAGACTTTA-CGTTGTCGATCGTGTCGCTGGACTCGACCTCCAATGTGA 982811 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||| || || || || ||||| |||||||| Sbjct 982810 TGGTCTTGCCGGTGAGGGTCTTGACAAAAATTTGCAT 982774 Score = 105 bits (116), Expect = 8e-18 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || ||||| ||||| | ||| || | || |||||||||||||||||||| Sbjct 982225 CTCCTTCTGAATGTTGTAATCGGACAAAGTACGACCATCCTCGAGCTGCTTGCCGGCGAA 982166 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||||||||||||||| | || | || ||||||||| ||||| |||||| | Sbjct 982165 GATCAAGCGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGAATCTTGCTCTTGACATT 982106 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569 | | |||||| || ||||| || | ||||| || || || || Sbjct 982105 GTCGATAGTGTCGGATGACTCCACCTCAAGGGTGATCGTCTTACCGGT 982058 Score = 102 bits (112), Expect = 9e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || ||||||||||| || || ||||| | || || |||||||| || ||||| Sbjct 982736 TCCTTCTGAATATTGTAGTCCGAGAGTGTGCGACCATCCTCTAGCTGCTTACCAGCGAAG 982677 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||| ||||| || | || | || ||||||||| ||||| |||||| | Sbjct 982676 ATAAGGCGTTGCTGATCAGGGGGGATGCCTTCCTTGTCCTGAATCTTGCTCTTGACATTG 982617 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||| || ||||| || | ||||| || ||||| || || || || || Sbjct 982616 TCGATAGTGTCGGATGACTCCACCTCAAGGGTGATCGTCTTGCCGGTGAGGGTCTTGACG 982557 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 982556 AAGATCTGCAT 982546 Score = 100 bits (110), Expect = 3e-16 Identities = 140/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| || ||||||| ||| |||||| ||||| ||||||||||| | || || | Sbjct 982532 CGCAGGACGAGATGCAGTGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGGCCA 982473 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || || |||||||| ||||| |||| |||||||| || | || | | ||||||| Sbjct 982472 TCCTCAAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGATCTGGAGGGATACCCTCCTTG 982413 Query 46499 TCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 || ||||||| ||||| ||| | | | || ||| || || || || | ||||| Sbjct 982412 TCTTGGATCTTCGACTTGA-CGTTGTCAATGGTATCGGAGGACTCGACCTCGAGAGTGAT 982354 Query 46558 GGTTTTGCCCGTCA 46571 ||| ||||| |||| Sbjct 982353 GGTCTTGCCGGTCA 982340 >seq13 Length=1247346 Score = 120 bits (132), Expect = 3e-22 Identities = 96/116 (83%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| |||| ||||||||||||||||| || Sbjct 565578 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 565519 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 ||||||||||||||||| | || | || |||||||||| |||||| ||||| Sbjct 565518 GATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA 565463 >seq20 Length=976498 Score = 98.7 bits (108), Expect = 1e-15 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| || | || |||||| ||||| ||||||||||| || ||||| | || || Sbjct 715774 CACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTC 715833 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 |||||||||||||||||| || | ||||||||||| | || | || ||||||||| Sbjct 715834 GAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 715890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565236859725360