Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq14 176 5e-39 seq20 104 2e-17 seq13 96.9 3e-15 seq4 96.9 3e-15 >seq14 Length=1191321 Score = 176 bits (194), Expect = 5e-39 Identities = 205/276 (74%), Gaps = 3/276 (1%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| |||||||||||| || || | || | ||| ||||||||||| ||| || || Sbjct 900540 GTATGTGTCGATGAGGAGAGAGTATGTCTCGGCGTGGACGTTCTCCATCATGATCTGGAA 900481 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 |||||| ||||| || |||||| | || || || | ||| |||||||| || || Sbjct 900480 GCCGTAGAAGCAACGGGCCTCGGGGATTTGAACCTCGCCGGAGAAGCGCTCGACAAGGTT 900421 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 |||||||| ||||| ||| ||||||||| ||||| || ||||| |||||| ||| Sbjct 900420 CTCGTTGACAATGCCATCGGAGGCGGCGAAGAAGGCGAGAACGTGGGAGATGAAGAAGCG 900361 Query 133347 CTCGTTGTCGTTCAAGCGC---TCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||||| ||| || | |||| | ||||||| | ||||||||| || || | |||||| Sbjct 900360 CTCGTCGTCATTGAGGCGCCTGTTCCAGTCGTGAAGGTCCTTGGAGAGATCGATCTCCTC 900301 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 ||||||| || || |||||||| || |||||||| Sbjct 900300 AGCGGTCCAGAAAGAAGCCTCGGCCTTCTTGTACAT 900265 Score = 176 bits (194), Expect = 5e-39 Identities = 329/478 (69%), Gaps = 4/478 (1%) Strand=Plus/Minus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 ||||| || ||||| || || || | | |||||| | ||| ||||| ||||||||| Sbjct 901132 TTCTCGAAGAAATTGGTCTTGCCGGCGAGCGAAATGTTCTCCATGAAATCGAAGGGGTTG 901073 Query 132685 GCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCG 132744 | | |||||||| ||||| | | ||| | | |||||| | ||| || ||||||||| Sbjct 901072 GTAGCGTTGTAGTACTTGGGGTTGCCAAGGGCCAAGAGCAGACGGTCAGCAACGAACTCG 901013 Query 132745 ATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCAGACGCACCGGCA-GCGCTTCGG 132802 ||||| || ||||| || | || | | | || |||||| |||| || | | || || | Sbjct 901012 ATGTACTGACACATGAGTGTGGCGTTCATG-CCGAGCAGA-GCACAGGGAAGAGCGTCTG 900955 Query 132803 TGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGC 132862 || || |||||||| | ||| || ||||||| ||| || || | || || Sbjct 900954 ACAGGAACTCCTGCTCGATTGTGACAGCCTCGGTGATGATAGCCTCGACAGCCTCCTTGC 900895 Query 132863 TCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGT 132922 | || || | | | |||| |||||| ||||| || |||| |||||| | Sbjct 900894 TGGGACGGTTGTTGAGGAGAGAAAACAACAAGCAGGCAAAATCTGTGTGCATGCCCTCAT 900835 Query 132923 CCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCC 132982 | | || ||||| |||||| ||| || | ||||||||||| || || ||||| |||| Sbjct 900834 CACGAGAGATGAGCTCGTTGGAGAATGTGAGACCGGGCATGAGACCACGCTTTTTCAGCC 900775 Query 132983 AAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCA 133042 | || |||| ||||| || ||||||| ||||| ||||| ||||| || || | Sbjct 900774 AGAAGATGGACGCGAAGGAACCACTGAAGAAGATACCCTCAACGGCAGCGAAGGCGACGA 900715 Query 133043 GGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100 |||| | | |||| |||| | ||| | |||||| || || ||||| |||||||| Sbjct 900714 GGCGGTTGGCGAATGTGGAGTTCTTGTCAGAGATCCATCGGAGAGCCCAGTCGGCCTT 900657 >seq20 Length=976498 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| |||||| | ||||| ||||| ||||| | ||| ||||| ||||| || Sbjct 715890 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAG 715831 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 || | ||||||||| ||||||||||||||| ||||| | || || || ||||||| Sbjct 715830 GATGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACTCTCCACCTGGTGCTC 715771 Query 38457 CG 38458 || Sbjct 715770 CG 715769 >seq13 Length=1247346 Score = 96.9 bits (106), Expect = 3e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| ||||| |||||| | ||||| ||||| | || | || ||||| Sbjct 565471 AAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCTTGATCTTTGCCGGCAAG 565530 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 ||||| || |||| ||||||||| ||||||||||||||| ||||| |||| || || Sbjct 565531 CAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCGACTCTCCAC 565590 Query 38448 TTGGTGCTGCG 38458 |||| || || Sbjct 565591 CTGGTCCTCCG 565601 >seq4 Length=1699079 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326 || ||||| |||||||| |||| |||||| || |||| | | | | |||| | || Sbjct 982342 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCCGATACCATTGACAACG-TCAAGTC 982400 Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386 || |||| ||||| ||||| || || | || || ||||| || |||| ||| ||||| Sbjct 982401 GAAGATCCAAGACAAGGAGGGTATCCCTCCAGATCAGCAGCGTCTGATTTTCGCTGGCAA 982460 Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 || || || || | || ||| | ||||||||||||||| ||||| | || ||||| Sbjct 982461 GCAACTTGAGGATGGCCGTACCTTGTCCGACTACAACATCCAGAAGGAGTCCACACTGCA 982520 Query 38447 TTTGGTGCTGCG 38458 | | || ||||| Sbjct 982521 TCTCGTCCTGCG 982532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500171437029120