Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq4 293 3e-74 seq25 140 4e-28 seq17 104 3e-17 >seq4 Length=1699079 Score = 293 bits (324), Expect = 3e-74 Identities = 699/1065 (66%), Gaps = 60/1065 (6%) Strand=Plus/Minus Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 ||||| | | ||| ||||| || || | || ||||| || || ||||| |||||||| Sbjct 253378 TCACCAGACAGGATAGCGGCCTGAACGGCGGCGCCGTAGGCAACGGCCTCGTCGGGGTTG 253319 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129 || | || || | || || ||||| || | || || | ||| | || | || ||| Sbjct 253318 ATGGACTTGTTGGGCTCCTTGCCGTTGAAGAAGTCGGAGACCATCTTCTGGACCTTGGGG 253259 Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189 || || || || |||||||| | |||||| || | || || || |||||||| | Sbjct 253258 ATACGGGTGGAACCACCGACGAGAACGATCTCGTGAACGGAAGACTTGTCGATCTTAGCA 253199 Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCC 7249 || || || ||||| || ||||| ||||| | |||| || |||||| Sbjct 253198 TCACGGAGGACGCGCTCGACGGGCTCCATGGTGGAGCGGAAGAGGTCCTGGCAGAGTTCC 253139 Query 7250 TCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATT 7309 || ||||| |||||||| || || || ||||| || | || ||||| | || || || Sbjct 253138 TCGAAACGGGCACGGGTGATCGAGGTGTAGAAGTCGATACCCTCGTACAGGGAGTCGATC 253079 Query 7310 TCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGT 7369 || |||| || || || | ||||| | || ||||| || ||||| || || || || Sbjct 253078 TCGATGGAGGTCTGGGCAGAAGAAGAGAGGGTGCGCTTGGCACGCTCGCAAGCGGTGCGG 253019 Query 7370 AAACGACGAAGGGCACGCGGGTT----------------------------ACCG----- 7396 | ||| || || || || | ||| | || Sbjct 253018 AGACGGCGGAGAGCGCGGGCGTTGGAGGTCAGGTCCTACATGGAGTTAGTCAACGAATTT 252959 Query 7397 -----GAAATAT---------------CTTTCTTATGTTTACGTTTAAACTCTTCAGAGA 7436 || |||| | ||||| ||||| ||||| ||||| | || || Sbjct 252958 TGGGAGACATATTGCGAGTTCTTCTTACCTTCTTGTGTTTGCGTTTGAACTCGTTAGTGA 252899 Query 7437 AGTG-TCGA-AGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGT 7494 |||| | || | || | | ||||| ||||||||||||||||| ||||| || || || Sbjct 252898 AGTGGTTGACAAGACGGTTG--TCGAAGTCTTCACCACCCAAGTGAGTATCTCCGGCAGT 252841 Query 7495 CGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACC 7554 || ||||| || |||||||| | |||||| | | | || ||||| || |||||||| Sbjct 252840 CGACTTGACCTCGAAGATACCCTCCTCAATGGTCAGGAGAGAGACATCGAATGTACCACC 252781 Query 7555 ACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGC 7614 ||| || || || ||||| ||||| || | || | ||||| || |||||||| || Sbjct 252780 ACCAAGATCGAAGATGAGAACGTTGCGCTCACCCTCGGTCTTCTTGTCAAGACCGTAGGC 252721 Query 7615 GATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGC 7674 ||| || || || || || || || || ||||| || ||| ||||| ||||| | Sbjct 252720 GATGGCAGCGGCGGTGGGCTCGTTGATGATACGGAGGACGTTGAGGCCGGCAATGAGACC 252661 Query 7675 CGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGC 7734 ||||| || || || || |||||||| ||||| |||||||| ||||| || ||||| || Sbjct 252660 AGCATCCTTGGTGGCCTGACGTTGCGAGTCGTTGAAGTAGGCAGGGACTGTGACGACAGC 252601 Query 7735 GTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCAT 7794 || |||| | |||||| || ||||| ||| | || |||| ||| || ||||| Sbjct 252600 GTTGTTGACGGTGCCACCGAGGTAGGATTCAGCGGTCTCCCTCATCTTGACGAGGACCAT 252541 Query 7795 CGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCAT 7854 || || ||||| |||| | || ||| ||||| || || ||||| | || | Sbjct 252540 AGAAGAGATCTCCTCAGGTGTGAAGGTCTTCTCCTCACCCTTGAACTCAACCTGGATGAC 252481 Query 7855 GGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGAC 7914 || || |||| ||| ||||| | | | | ||||||||| | || || Sbjct 252480 AGGCTT---GCCAGCCTTCTCGATGACCTTGAAGGGGAAGTGCTTCATATCGGCCTGAAC 252424 Query 7915 CTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGG 7974 || || | ||||| | ||||||||||||||| || || || |||||||| || Sbjct 252423 CTCAGCATCGGCGAACTTGCGTCCGATAAGACGCTTAGCGTCGAAGACTGTGTTGACTGG 252364 Query 7975 GTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTC 8019 ||||||||| ||||||||||| | || || ||||| || || Sbjct 252363 GTTCATGGCAACCTGGTTCTTCGCGGAATCACCAATAAGGCGCTC 252319 >seq25 Length=545876 Score = 140 bits (154), Expect = 4e-28 Identities = 245/354 (69%), Gaps = 2/354 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||||||||||||||| | ||| || || || ||||| | | ||| || || | || Sbjct 136939 TCGAAATCTTCACCACCGAGGTGAGTGTCACCGGCGGTAGACTGGACCTCGAAAACGCCC 136998 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 |||| || | | | ||||| || || ||||||||||| || || | | ||| || Sbjct 136999 TCTTCGATAGTGAGGATGGAAACGTCGAAAGTACCACCACCAAGATCGTAGACGAGAACC 137058 Query 7577 TT-CGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 | ||| || | | | | |||| || || ||||| |||| ||| || || || ||||| Sbjct 137059 TGGCGT-TCCTTTTGGTCGGTCTTGTCAAGGCCGTAGGCGAGAGCGGCGGCGGTGGGTTC 137117 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || | | ||| ||| ||| || || || || ||| | || || ||||| || || Sbjct 137118 GTTGACGACACGGAGAACGTTGAGACCGGCGATGGTTCCGGCGTCCTTCGTGGCAGCGCG 137177 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || | ||||| |||||||||||||| || ||||| |||| | |||| || ||||| Sbjct 137178 CTGAGCGTCGTTGAAGTAGGCCGGGACGGTAACGACGGCGTTCTTGACGGGCTCGCCGAG 137237 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 || || || | || ||||| ||| ||||||||| | || |||||||| Sbjct 137238 GTAGCTCTCAGCAACCTCCTTCATCTTGCCAAGAACCATAGCCGAGATCTCTTC 137291 >seq17 Length=1134567 Score = 104 bits (114), Expect = 3e-17 Identities = 219/327 (67%), Gaps = 6/327 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| ||||||||||| | ||| || || || ||| | ||||| || |||| ||| Sbjct 670465 TCGAAGTCTTCACCACCGAGGTGAGTGTCACCGTTGGTGGACTTGACCTCGAAGACACCG 670524 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || | | | || | ||| || ||||||||||| || || | | | ||| Sbjct 670525 TTCTGGATCTCGAGAATGGAGATATCGAATGTACCACCACCAAGATCGTAGACGGCGACG 670584 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 ||| ||| || ||| ||||||||||| || | || || || || || || Sbjct 670585 A------CGTTGTCGGTGGCCTTGTCGAGACCGTAGGCAAGGGCGGCAGCGGTAGGCTCG 670638 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || | | ||| || ||| || |||||||| | || || || || || || || Sbjct 670639 TTGACGACACGGAGGACGTTGAGACCAGCAATCTGACCGGCGTCCTTGGTGGCCTGACGC 670698 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || || ||||| |||||||| ||||| || ||||| |||| | |||| ||||| || | Sbjct 670699 TGGGAGTCGTTGAAGTAGGCGGGGACGGTGACGACGGCGTTCTTGACGTTCTTGCCCATG 670758 Query 7757 TACGATTCCGCGATATCTTTCATTTTG 7783 || || || ||| | || ||||| ||| Sbjct 670759 TAGGACTCGGCGGTCTCCTTCATCTTG 670785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635131069263120