Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq9 230 3e-55 seq14 123 3e-23 seq21 87.8 2e-12 >seq9 Length=1465676 Score = 230 bits (254), Expect = 3e-55 Identities = 1117/1749 (64%), Gaps = 51/1749 (3%) Strand=Plus/Plus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 ||| ||| ||||| ||||||| || || |||| ||||| ||| || || || | Sbjct 1036410 CCCGCAGCACATGCTCATGCGTGTTGCCGTCGGCATCCACATGGAGGACATCGAGAAGGC 1036469 Query 111671 TTTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCT 111729 | |||||||||||| | ||||| | | ||| |||| ||||| | || || |||| Sbjct 1036470 CATCGAGACATACGACTACATGTCGCAGAAGTAC-TTCACACACGCCTCGCCGACGCTCT 1036528 Query 111730 TCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGG 111789 ||||||| || ||||| || || ||||| || ||||| || | | ||||||| Sbjct 1036529 TCAACGCCGGCACACCCTCGCCGCAGATGTCGTCCTGCTTCCTCATCGACATGAAGGAGG 1036588 Query 111790 ATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTG 111849 | ||| | ||||| |||| ||| |||| || || ||||| ||| |||| Sbjct 1036589 ACAGCATCGAGGGCATCTACGACACACTCAAGACCTGCGCGTTGATCTCCAAGACTGCTG 1036648 Query 111850 GTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAGGTAC 111907 | || || || | || |||| | | |||| | ||| || | |||| || Sbjct 1036649 GCGGAATTGGCCTCAACGTCCACCGCATTCGTGCCACT--GGCTCCTACATCGGAGGAAC 1036706 Query 111908 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 111967 || || ||| | ||| | || || ||||| || || | ||| ||| || ||||| Sbjct 1036707 CAACGGAACATCGAACGGTCTCATCCCCATGCTCCGTGTCTACAACAACACTGCCCGCTA 1036766 Query 111968 TGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATG 112021 || |||| | ||| ||| | | || | |||| |||| || |||||||| Sbjct 1036767 CGTCGACCAGGGTGGCAACAAGCGCCCC---GGTGCCTTCGCCATCTACCTCGAGCCATG 1036823 Query 112022 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCG 112081 |||||| || || | | ||||| || | | ||||| || | ||||||| || Sbjct 1036824 GCACGCTGACGTCTTCGGCTTCCTCGACCTCAGGAAGAACCACGGCAAGGAGGAGGTTCG 1036883 Query 112082 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 112141 |||||||||||||| |||||| ||||| || |||||||||||| || | || || | Sbjct 1036884 CGCCCGCGATCTCTTCTACGCTCTGTGGATCCCCGATCTCTTCATGGAGCGTGTCCAGCA 1036943 Query 112142 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGG 112201 || ||| | ||| | ||| | || || || || || || ||| | || | | || Sbjct 1036944 GAACGGCGAGTGGACACTCATGTGCCCCAACGAGTGCCCTGGCCTCGCTGACGTCTACGG 1037003 Query 112202 TGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAA----GAAAGTCGGGCGACTGCGA 112257 ||| ||||| | ||||| ||| ||||||||| || | ||| || || || || Sbjct 1037004 TGACGAGTTCGTCGCCCTGTACGAGAAGTACGAGAAAGCGGGCAAG--GGTCG--TGAGA 1037059 Query 112258 CGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 112316 | || | ||| | || | | ||| | || |||||| || |||| |||||||| |||| Sbjct 1037060 CTGTCCGTGCT-CAGAAGCTCTGGTACGCCATTCTCGAGGCTCAGACCGAGACCGGTAAC 1037118 Query 112317 CCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 112376 || | ||||| ||||| || || ||| ||||| || || ||||| | ||| Sbjct 1037119 CCCTTCATGCTCTACAAGGATGCTGCCAACAGGAAGAGCAACCAGAAGAACCTTGGTACC 1037178 Query 112377 ATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCT 112436 ||| || |||||||| || || |||||| | || | || | |||||| ||| Sbjct 1037179 ATCCGCAGCTCCAACCTGTGCACTGAAATCATCGAGTACACTGCTCCCGATGAGGTCGCT 1037238 Query 112437 GTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA--TCCAGAGACAAAGACAT 112494 || || ||||| || || | ||||||||| | || || || || | | || | Sbjct 1037239 GTCTGCAACCTGGCCTCTGTTGCTCTCCCCTCCTTCGTTGACTTCAAGCG-CGGCGA-GT 1037296 Query 112495 TTGATTATGAAAAACTCCACGAAGT--TACGAAAACTGTCACAAAAAACCTAAACAGAGT 112552 | || | | || || ||||| || | | | ||| |||| ||||| |||| | Sbjct 1037297 TCGACTTCCAGAAGCTTCACGATGTCGTTC-AGGTCTG-CACACGTAACCTCAACAAGAT 1037354 Query 112553 TATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCC 112612 || || || |||||||| ||| || || || | | ||| | || Sbjct 1037355 CATCGAGGTCAACCACTACCCCGTCGAGGAGGCACGCCGCAGCAACTTCCGTCACAGACC 1037414 Query 112613 AATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGA 112672 ||||||||||||||||| ||||| || |||| ||| || | |||| | || || Sbjct 1037415 CATTGGTCTCGGTGTCCAGGGTCTTGCTGATGCTTTCCTTGCTCTCCGCCTGCCTTTCGA 1037474 Query 112673 TTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCT 112732 || ||||| ||||| |||| || || || || || || ||||||||| | Sbjct 1037475 GTCTCCTGAAGCCAAGGAGCTCAACATCAAGATCTTCGAAACCATCTACCACGCCGCT-T 1037533 Query 112733 TGA-GGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTC-T 112790 ||| | | || | || ||| ||| || || || || | |||||| || Sbjct 1037534 TGACCTCCTCCTGCGACATTGCTAAGGAGCTTGGCCCCTACGAGACATATGAGGGCTCGC 1037593 Query 112791 CCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTAC 112850 ||| || || | || | |||||| | ||| |||||| | || ||| || | Sbjct 1037594 CCATCTCCA-AGGGTGAGCTTCAGTATGACCTGTGGGGCGTCAAGCCCACCGATCTTTGG 1037652 Query 112851 GACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATG 112910 |||||||| || || |||| || || | ||| | || ||| || | | Sbjct 1037653 GACTGGGAGGCGCTGAAGGCGAAGATTGCTCAGCACGGTGTCCGCAACTCGCTACTCGTC 1037712 Query 112911 GCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCC 112970 || || ||||| || ||||||||| | || || | || || || || ||||| || ||| Sbjct 1037713 GCGCCCATGCCTACTGCCTCCACCTCCCAGATTCTCGGCAACAACGAGTGCTTCGAGCCC 1037772 Query 112971 TACACGACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAA 113029 ||||| |||||||||| ||| | | || || || ||||| | ||||||| Sbjct 1037773 TACACATCGAACATCTACTCT-CGCCGCGTGCTTGCTGGTGAGTTCCAGGTTGTCAA--- 1037828 Query 113030 GCATCTCGTGG----ATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATC 113085 | || || | | ||||| || || ||||||||| || || | |||||| | | Sbjct 1037829 -CCCCTGGTTGCTCAAGGACCTGGTCGACATGGGTCTCTGGACCGAGAACATGAAGAACC 1037887 Query 113086 TCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGA 113145 ||| | | ||||||||||||||| || | || || || || || |||| Sbjct 1037888 GCATCATCGCTGAGGGTGGTTCCATTCAGCGCATCCCCAACATCCCTGACGAGATCAAGA 1037947 Query 113146 AGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATC 113205 ||||| || || ||||| ||| | | |||| | |||||||| || | Sbjct 1037948 CTCTGTACAAGACCGTCTGGGAGATCTCGCAGCGTACCATCATCCAGATGGCCGCTGACC 1038007 Query 113206 GTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCCAACGAT 113263 ||||| |||||| |||| |||| ||| |||| | |||| | || || || Sbjct 1038008 GTGGTGCCTTCATCGATC--AGTCTCAGTCCCTGAACATCCACATGAAGGAGCCTACTAT 1038065 Query 113264 GTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTA 113323 | |||| || | || |||||| | | |||||| |||||||| || || ||||| Sbjct 1038066 GGGCAAGATCACATCCATGCACTTCGCTGGCTGGAAGCTCGGTCTCAAGACCGGCATGTA 1038125 Query 113324 TTACCTCCG 113332 |||||||| Sbjct 1038126 CTACCTCCG 1038134 >seq14 Length=1191321 Score = 123 bits (136), Expect = 3e-23 Identities = 119/150 (79%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 102183 CGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTAT 102241 || ||| |||| || || |||||||||||||||||| |||||||||| ||| | || Sbjct 900711 CGCCTCGTCGCCTTCGCTGCCGTTGAGGGTATCTTCTTCAGTGGTTCCTTC-GCGTCCAT 900769 Query 102242 TTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTC 102301 | ||||| || ||||| ||||||||||| |||||| |||||||||||||| ||||| Sbjct 900770 CTTCTGGCTGAAAAAGCGTGGTCTCATGCCCGGTCTCACATTCTCCAACGAGCTCATCTC 900829 Query 102302 TCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||||| ||||| | ||| ||| ||||| Sbjct 900830 TCGTGATGAGGGCATGCACACAGATTTTGC 900859 >seq21 Length=968111 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/228 (70%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 16064 GGCATCAATCTCATCAATGAAGACGATGCATGGT-TGATTTTCGCGAGCGACTTCAAAGA 16122 ||| ||||||||||| ||||||| ||| |||||| || | || ||| ||| | || | Sbjct 87448 GGCGTCAATCTCATCGATGAAGATGATACATGGTGTGCTCTT-GCGCGCGTTGGCGAACA 87390 Query 16123 GATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG--CGGCGGA 16180 | || ||||| ||| || || ||||| || |||||||| || || | | | || | Sbjct 87389 GGTCTCGTACTCGCGATGCACCAACACCGACGAACATCTCAACGAATTCGGAACCGCTG- 87331 Query 16181 ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 16240 ||| | || ||| || || ||| || || || |||| ||| || | |||||||| Sbjct 87330 ACACT-GAAGAAAGGCACGCCAGACTCGCCAGCTGTGGCCTTGGCAAGCAATGTCTTACC 87272 Query 16241 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288 |||||||| ||| | ||| | || || || |||||||| ||||| Sbjct 87271 GGTACCTGGGGGACCAGAGAGAACAGCGCCGCGGGGAATCTTAGCGCC 87224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620740708476960