Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq21 163 3e-35 seq9 145 9e-30 >seq21 Length=968111 Score = 163 bits (180), Expect = 3e-35 Identities = 343/500 (69%), Gaps = 15/500 (3%) Strand=Plus/Minus Query 11506 TCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGCA 11565 |||||||| || || || | | ||| | || |||| ||| ||||| ||| | || Sbjct 87627 TCGAAACGGCCAGGACGCATCAAAGCCTTGTCGAGAACATCAGGTCGGTTGGTACCCGCG 87568 Query 11566 ATGACTACAATGCCAG-TCTCAT-TGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGA 11623 | || || | || | ||| | ||| |||||||||||| ||||| | | |||||||| Sbjct 87567 AGAACAACGA--CCTGCTCTGTTGTGTTGAAACCGTCCATCTCTGTCAAGATCTGGTTGA 87510 Query 11624 TCGTCTGTTCACGCTCATCGTTGGAGGG-CATACCACCTGC--CGAACGCTTCTTACCGA 11680 ||| |||||||| |||||| | | | |||| ||||||| ||| | Sbjct 87509 GTGTCGCCTCACGCTCGTCGTTGCCGCCACCGAAGTTCTGCTTCGAACGCGATCGACCAA 87450 Query 11681 CAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAA 11740 |||||||||||||||||||| | |||||| ||| | | || || | |||| | Sbjct 87449 TGGCGTCAATCTCATCGATGAAGATGATACATGGTGTGCTCTTGCGCGCGTTGGCGAACA 87390 Query 11741 GTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG--CGGCAGA 11798 | || ||||| ||| || |||||||| ||||||||||||||||| | | | || | Sbjct 87389 GGTCTCGTACTCGCGATGCACCAACACCGACGAACATCTCAACGAATTCGGAACCGCTG- 87331 Query 11799 ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACC 11858 |||||||| ||| || || |||||| ||||| |||| || || | |||||||| Sbjct 87330 ACACTGAA-GAAAGGCACGCCAGACTCGCCAGCTGTGGCCTTGGCAAGCAATGTCTTACC 87272 Query 11859 CGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC--ACTTCCAAAG 11916 ||||| || | ||||| ||||| ||||| ||||| ||||| || || |||| | Sbjct 87271 GGTACCTGGGGGACCAGAGAGAACAGCGCCGCGGGGAATCTTAGCGCCGAGCTTC--TGG 87214 Query 11917 TAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCG 11976 | || | || | ||||||||| ||||| |||| || |||| ||| || ||| Sbjct 87213 AACCGTCCGGGGTCCTTGAGGAAAGACACAAACTCCATAATCTCCTGCTTAGCCTCGTCC 87154 Query 11977 ATACCCTCAACATCGGTGAA 11996 || || |||| |||| ||| Sbjct 87153 ATGCCAGCAACGTCGGCGAA 87134 >seq9 Length=1465676 Score = 145 bits (160), Expect = 9e-30 Identities = 254/367 (69%), Gaps = 26/367 (7%) Strand=Plus/Minus Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGA---T 109556 ||||| |||||||||||||||||||| |||||| ||||| ||||| | ||||| | Sbjct 1038042 GTTCAGGGACTGAGACTGATCGATGAAGGCACCACGGTCAGCGGCCATCTGGATGATGGT 1037983 Query 109557 ACACTTTTGGCTA-ATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGT 109615 || || || | || |||||||| |||||||||| | ||||||| || || || |||| Sbjct 1037982 ACGCT----GCGAGATCTCCCAGACGGTCTTGTACAGAGTCTTGATCTCGTCAGGGATGT 1037927 Query 109616 CCACGATGTTTTGAATAGAGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACC 109675 |||| ||||| || ||||| | | ||| | | |||||| | | | || Sbjct 1037926 TGGGGATGCGCTGAATGGAACCACCCTCAGCGATGATGCGGTTCTTCATGTTCTCGGTCC 1037867 Query 109676 AGAGAC------CGACC---TTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAA 109726 |||||| ||||| | ||||| |||| || |||||| || | Sbjct 1037866 AGAGACCCATGTCGACCAGGTCCTTGAG-----CAACCAG----GGGTTGACAACCTGGA 1037816 Query 109727 ATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCAT 109786 | ||||||||||| ||| || ||||||||| | |||||||| ||||| ||||| | Sbjct 1037815 ACTCACCAGCAAGCACGCGGCGAGAGTAGATGTTCGATGTGTAGGGCTCGAAGCACTCGT 1037756 Query 109787 TGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTC 109846 ||||||| || || || | ||||| || || |||||||| || | ||| || ||| | Sbjct 1037755 TGTTGCCGAGAATCTGGGAGGTGGAGGCAGTAGGCATGGGCGCGACGAGTAGCGAGTTGC 1037696 Query 109847 GGAGACC 109853 ||| ||| Sbjct 1037695 GGACACC 1037689 Score = 140 bits (154), Expect = 4e-28 Identities = 521/804 (65%), Gaps = 17/804 (2%) Strand=Plus/Minus Query 110280 GGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAA 110339 ||||||||||| ||| || || ||||| |||| ||| || | ||||| || | Sbjct 1037268 GGGGAGAGCAACAGAGGCCAGGTTGCAGACAGCGACCTCATCGGGAGCAGTGTACTCGAT 1037209 Query 110340 AATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGA 110399 ||||| || |||| |||||| || ||| ||| | ||||||||| || || Sbjct 1037208 GATTTCAGTGCACAGGTTGGAGCTGCGGATGGTACCAAGGTTCTTCTGGTTGCTCTTCCT 1037149 Query 110400 GTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAAT 110459 |||| |||||||| ||||||||| | ||| |||| || || ||||| | || |||||| Sbjct 1037148 GTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTACCGGTCTCGGTCTGAGCCTCGAGAAT 1037089 Query 110460 GGCCTTCCATA-CATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCTCCTCGTACT 110518 ||| | ||| | | || | || ||||||| | | | || | | |||||||| Sbjct 1037088 GGCGTACCAGAGCTTCTG-AGCACGGACAGTCTCACGACCCTTGCCCGCTTTCTCGTACT 1037030 Query 110519 TGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGG 110578 | ||||| | | | || || | ||||| || |||| || || || || || Sbjct 1037029 TCTCGTACAGGGCGACGAACTCGTCACCGTAGACGTCAGCGAGGCCAGGGCACTCGTTGG 1036970 Query 110579 GACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCC 110638 | || | ||| | ||| | || || || || | || |||||| || || || |||| Sbjct 1036969 GGCACATGAGTGTCCACTCGCCGTTCTGCTGGACACGCTCCATGAAGAGATCGGGGATCC 1036910 Query 110639 ACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCT 110698 ||| || |||| || || ||| ||| |||| || | || ||||| | || | Sbjct 1036909 ACAGAGCGTAGAAGAGATCGCGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTCCTGAGGT 1036850 Query 110699 CCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCC----- 110753 | | ||| | | || || | ||||||||| ||||| |||| |||| || || Sbjct 1036849 CGAGGAAGCCGAAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCGGGGC 1036790 Query 110754 -CTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAG 110812 ||| | | || |||||| || ||||| || ||| ||| |||| | |||||| | Sbjct 1036789 GCTT--GTTG-CCACCCTGGTCGACGTAGCGGGCAGTGTTGTTGTAGACACGGAGCATGG 1036733 Query 110813 GAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGT 110872 | || | || | ||| || || || || | || ||| | ||||||||||| Sbjct 1036732 GGATGAGACCGTTCGATGTTCCGTTGGTTCCTCCGATGTAGGAGCCAGTGGCACGAATGC 1036673 Query 110873 CGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTGAGT 110931 ||||| | | ||||| || || || ||| || || || ||| ||||| Sbjct 1036672 GGTGGACGTTGAGGCCAATTCCGCCAGCAGTCTTGGAGATCAACGCGCAGGTCT-TGAGT 1036614 Query 110932 GTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATC 110991 || | || || || || || || |||| || | || || ||||| || |||||| Sbjct 1036613 GTGTCGTAGATGCCCTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGACGACATC 1036554 Query 110992 TGAGGACGA-GGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCT-T 111049 || || ||| || || || || |||||||| || || | || || |||| || | | Sbjct 1036553 TGCGG-CGAGGGTGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGTGTGAA-GTACTTCT 1036496 Query 111050 GGGACATCTTGTTGTATGTGTCGA 111073 | ||||| | || |||||| |||| Sbjct 1036495 GCGACATGTAGTCGTATGTCTCGA 1036472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588974395040400