Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq9 309 6e-79 seq14 143 5e-29 >seq9 Length=1465676 Score = 309 bits (342), Expect = 6e-79 Identities = 958/1461 (66%), Gaps = 51/1461 (3%) Strand=Plus/Minus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGA 221476 |||| || |||||||||||||| || |||||| | ||||||| |||||| || ||| Sbjct 1037537 GTCAAAGCGGCGTGGTAGATGGTTTCGAAGATCTTGATGTTGAGCTCCTTGGCTTCAGGA 1037478 Query 221477 GAAGTGAAGGGCATACGCAGCATCT--GAAAGACGTCGGCCAGTCCCTGTACTCCGATAC 221534 || ||| |||| || || | | ||||| | || || || ||||| || |||| || Sbjct 1037477 GACTCGAAAGGCAGGCGGAG-AGCAAGGAAAG-CATCAGCAAGACCCTGGACACCGAGAC 1037420 Query 221535 CGATGGGCCTGTGTCTCCTGTTGGAAGCGGCC-GCTTCTGGCACGGGATAAAAGTTGACG 221593 | ||||| ||||| | |||| ||||| || || ||||| || |||||| Sbjct 1037419 CAATGGGTCTGTGACGGAAGTTGCT-GCGGCGTGCCTCCTCGACGGGGTAGTGGTTGACC 1037361 Query 221594 TCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGA 221653 ||||| | ||||||||||| | ||| ||| | ||| || ||| ||||||||| Sbjct 1037360 TCGATGATCTTGTTGAGGTTACGTGTGCAGACCTGAACGACATCGTGAAGCTTCTGG--- 1037304 Query 221654 TTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTG 221713 || | |||||||||| | || || || || || | | || ||||| | Sbjct 1037303 ---AAGTCGAACTCGCCGCGCT--TGAAG----TCAACGAAGGAGGGGAGAGCAACAGAG 1037253 Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773 |||||||| || || || ||||| || || |||| ||||| || || || ||| Sbjct 1037252 GCCAGGTTGCAGACAGCGACCTCATCGGGAGCAGTGTACTCGATGATTTCAGTGCACAGG 1037193 Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833 ||| || |||||| || |||| || || || ||| | |||||||| |||||| Sbjct 1037192 TTGGAGCTGCGGATGGTACCAAGGTTCTTCTGGTTGCTCTTCCTGTTGGCAGCATCCTTG 1037133 Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCT 221893 |||||||| ||||| || ||||| ||||||| | ||||| || |||||| | | Sbjct 1037132 TAGAGCATGAAGGGGTTACCGGTCTCGGTCTGAGCCTCGAGAATGGCGTACCAGAGCT-T 1037074 Query 221894 CTG-GCGCTCACCGTCCTCTTGAC---TGCACCCTCGGTCTTTTCATAC--CCGGTATAG 221947 ||| || | || || ||| ||| ||| | || || || ||| | ||| || Sbjct 1037073 CTGAGCACGGACAGT-CTCACGACCCTTGCCCGCT-----TTCTCGTACTTCTCGTACAG 1037020 Query 221948 AGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATC 222007 || | | |||| |||||||| | || | ||||| || ||| | ||| ||||| Sbjct 1037019 GGC--GACGAACTCGTCACCGTAGACGTCAGCGAGGCCAGGGCACTCGTTGGGGCACATG 1036962 Query 222008 AGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCC 222067 || |||| | ||| | | ||| | || ||||||||| || ||||||||||| || Sbjct 1036961 AGTGTCCACTCGCCGTTCTGCTGGACACGCTCCATGAAGAGATCGGGGATCCACAGAGCG 1036902 Query 222068 TGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAAC 222127 | |||||||| | || || ||||||| ||||| ||| ||||| || || | || Sbjct 1036901 TAGAAGAGATCGCGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTCCTGAGGTCGAGGAAG 1036842 Query 222128 TCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTG 222187 | || | |||||||||||| ||||| || |||| ||| | || ||||| ||||||||| Sbjct 1036841 CCGAAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCGGGGCGCTTGTTG 1036782 Query 222188 CCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCC 222246 |||||||| || | | | ||| | |||| ||| || || | || | || || Sbjct 1036781 CCACCCTGGTCGA-CGTAGCGGGCAGTGTTGTTGTAGACACGGAGCATGGGGATGAGACC 1036723 Query 222247 GTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGA 222306 ||| ||| |||||||| || ||||| | || ||| | | | || || Sbjct 1036722 GTTCGATGTTCCGTTGGTTCCTCCGATGTAGGAGCCAGTGGCACGAATG----CGGTGGA 1036667 Query 222307 C----ATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCA 222362 | | ||| || || || || || ||||||| |||||| ||||||| ||||| Sbjct 1036666 CGTTGAGGCCAATTCCGCCAGCAGTCTTGGAGATCAACGCGCAGGTCTTGAGTGTGTCGT 1036607 Query 222363 TGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATT 222422 ||||||||| || ||||||||| | || | || || || ||||||||||| | Sbjct 1036606 AGATGCCCTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGACGACATCTGCGGCG 1036547 Query 222423 TGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCA 222482 || | | |||||| || ||||| || ||||||||| ||||| | ||||| Sbjct 1036546 AGGGTGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGTGTGAAGTACTTCTGCGACATGT 1036487 Query 222483 GATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCA 222542 ||||| ||||| | | | | |||||| ||| ||| || | ||| | || Sbjct 1036486 AGTCGTATGTCTCGATGGCCTTCTCGATGTCCTCCATGTGGATGCCGACGGCAACACGCA 1036427 Query 222543 TGTACATGTACTGGGGCCTCTCCACAGGACCCT--TGGAGCTGGAGAGCAGGTACGATTT 222600 || ||||| ||| || | ||| | |||| | | | || ||||||||| || Sbjct 1036426 TGAGCATGTGCTGCGGGCGCTCGGC--GACCTTGCCGTTGATGCGGAGCAGGTATGAGCG 1036369 Query 222601 TTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGC 222660 || || |||||||| || ||| | | | || ||||| | | ||| || | |||| Sbjct 1036368 CTCGAGCGTCTTGAAGCCGAAGAACTGGTAGTTGAAGTCGCGGTCGTAGACGATGGCGCT 1036309 Query 222661 GTCCAGCTC--CGACTTGTGCTTTACGCTCAACTCGAAAAAGCGCTCAGACACGAGGGGA 222718 || ||||| || | || | | | | | || | | | ||| || || | | ||| Sbjct 1036308 GTTGAGCTCATCGGCATGGTCCT--GGATGATCTTGTAGACGCGGTCCGAGATCATGGGC 1036251 Query 222719 GCGTTCTCTTTGGTGTCGGGGTTAACGTTGTGGTACAGCTGCCACATGGCATCAGAGAAC 222778 || || | | | |||||| |||| | |||||| | | | | | | |||||| Sbjct 1036250 TGGTGCTTGCCGTTCTTGGGGTTGACGTATTCGTACAGGTCCTGGACGACGGCGGAGAAC 1036191 Query 222779 GTGTCGGGAGTCTGCTTGTGCAGATTCGACACGGCGATCCGAGACGCCAAGATACCATAG 222838 | |||||||||||||| || || |||||||| || | || | ||| | ||| Sbjct 1036190 TGCTTCTTCGTCTGCTTGTGCAGGTTGGAGACGGCGATACGCGCGGCGAGGATGGCGTAG 1036131 Query 222839 TCAGGGTGCACGGTGGTCATG 222859 || || || |||||||||| Sbjct 1036130 TCCGGATGTGTGGTGGTCATG 1036110 >seq14 Length=1191321 Score = 143 bits (158), Expect = 5e-29 Identities = 300/450 (67%), Gaps = 17/450 (4%) Strand=Plus/Plus Query 25879 CGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATC 25938 || || || ||||| ||||| || ||||| ||||| ||||| ||||| || ||| ||||| Sbjct 900711 CGCCTCGTCGCCTTCGCTGCCGTTGAGGGTATCTTCTTCAGTGGTTCCTTCGCGTCCATC 900770 Query 25939 TTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGC 25998 |||||||| || || || ||||||||| || || ||||||||||||||| Sbjct 900771 TTCTGGCTGAAAAAGCGTGGTCTCATGCCCGGTCTCACATTCTCCAACGAGCTCATCTCT 900830 Query 25999 AGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCAC 26058 | || ||||| | |||| ||||||||||||| || | | | | ||| || Sbjct 900831 CGTGATGAGGGCATGCACACAGATTTTGCCTGCTTGTTGTTTTC------TCTCCTCAAC 900884 Query 26059 AAACCTTC--TCAA-GAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAG 26115 || | | | ||| ||| | ||| | |||||||| |||||||| |||||| || Sbjct 900885 AACCGTCCCAGCAAGGAGGCTGTCGAGGCTATCATCACCGAGGCTGTCACAATCGAGCAG 900944 Query 26116 GAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGC 26175 ||||| | | ||||||||| || ||||||| | Sbjct 900945 GAGTTCCTGTCAGACGCTCTTCCCTGTGCTCTGCTCGGCATGAACGCCACACTCATGTGT 901004 Query 26176 CAATACATTGAGTATGTGGCCGACCATCTGCTGT--GCCAGCTGGGACTCGCCAGACTCT 26233 || ||||| |||| || || |||| |||||| | ||| || || | ||| || Sbjct 901005 CAGTACATCGAGTTCGTTGCTGACCGTCTGCTCTTGGCC--CTTGGCAACCCCAAGTACT 901062 Query 26234 ACAGTACGC--CTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAA 26291 ||| |||| | ||||| ||||| || ||||| ||||| ||| | | || |||||||| Sbjct 901063 ACA--ACGCTACCAACCCCTTCGATTTCATGGAGAACATTTCGCTCGCCGGCAAGACCAA 901120 Query 26292 CTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 ||||| || ||| | ||||| ||||| || Sbjct 901121 TTTCTTCGAGAAGCGTGTCGGTGACTACCA 901150 Score = 93.3 bits (102), Expect = 8e-14 Identities = 159/230 (69%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 ||| |||||||||||||||| | || ||||||||| || ||||| ||||| || Sbjct 900259 TGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCTGAGGAGATCGATCTCTCC 900318 Query 25540 AAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGT---AC 25596 |||||| | ||| |||| || | ||| ||||| ||| || ||| | || Sbjct 900319 AAGGACCTTCACGACTGGAACAGGCGCCTCAATGACGACGAGCGCTTCTTCATCTCCCAC 900378 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 || | || ||||| || ||||| ||||| || || |||||||| || |||| | ||| Sbjct 900379 GTTCTCGCCTTCTTCGCCGCCTCCGATGGCATTGTCAACGAGAACCTTGTCGAGCGCTTC 900438 Query 25657 ACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 || | || || || | |||||| || |||||||| |||||||| Sbjct 900439 TCCGGCGAGGTTCAAATCCCCGAGGCCCGTTGCTTCTACGGCTTCCAGAT 900488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928842268897920