Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq4 441 9e-119 seq17 120 4e-22 seq25 113 6e-20 seq21 113 6e-20 seq6 96.9 5e-15 >seq4 Length=1699079 Score = 441 bits (488), Expect = 9e-119 Identities = 1017/1534 (66%), Gaps = 71/1534 (5%) Strand=Plus/Plus Query 195406 CGTTGCCTTTACAGATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTAT 195465 ||||||||| || || | || || || |||| ||| |||| || || ||| || || Sbjct 252300 CGTTGCCTTCACCGACACAGAGCGCCTTATTGGTGATTCCGCGAAGAACCAGGTTGCCAT 252359 Query 195466 GAACCCTATCAATACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAA 195525 |||||| |||| || ||||| ||||| ||||||||||| || |||||||| | ||| Sbjct 252360 GAACCCAGTCAACACAGTCTTCGACGCTAAGCGTCTTATCGGACGCAAGTTCGCCGATGC 252419 Query 195526 GAAAGTCCAAGACGATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAA 195585 | || || | |||||| ||| ||| | | | ||| | || | | |||| || Sbjct 252420 TGAGGTTCAGGCCGATATGAAGCACTTCCCCT-TCAAGGTCATCGAGAAG--GCTGGCAA 252476 Query 195586 GCCTATGATTAATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTC 195645 |||| | || | ||||| || | |||||| |||| || | || || || || || Sbjct 252477 GCCTGTCATCCAGGTTGAGTTCAAGGGTGAGGAGAAGACCTTCACACCTGAGGAGATCTC 252536 Query 195646 GTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAA 195705 |||||||| | | ||||||| |||||| || ||||| | | | ||| || || || Sbjct 252537 TTCTATGGTCCTCGTCAAGATGAGGGAGACCGCTGAATCCTACCTCGGTGGCACCGTCAA 252596 Query 195706 AGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGA 195765 | || || || || || ||||| ||||||| || || ||||| ||||| || ||||| Sbjct 252597 CAACGCTGTCGTCACAGTCCCTGCCTACTTCAACGACTCGCAACGTCAGGCCACCAAGGA 252656 Query 195766 CGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGC 195825 |||| | ||||| || || ||| || | || ||||| || || || || ||||| Sbjct 252657 TGCTGGTCTCATTGCCGGCCTCAACGTCCTCCGTATCATCAACGAGCCCACCGCCGCTGC 252716 Query 195826 AATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCT 195885 || || || ||||| |||||||| | || | || || || | ||||| ||||| Sbjct 252717 CATCGCCTACGGTCTTGACAAGAAGACCGAGGGTGAGCGCAACGTTCTCATCTTCGATCT 252776 Query 195886 CGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAA 195945 ||||||||||| || |||||||| || || | ||||| | ||||| ||||| || || Sbjct 252777 TGGTGGTGGTACATTCGATGTCTCTCTCCTGACCATTGAGGAGGGTATCTTCGAGGTCAA 252836 Query 195946 GGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA 196005 | | ||||| || |||||||| | ||||||||||| ||||| |||||| || || Sbjct 252837 GTCGACTGCCGGAGATACTCACTTGGGTGGTGAAGACTTCGACAACCGTCTTGTCAACCA 252896 Query 196006 TTTGTCTGATGAGTTC---CG---TCGAAAGAA--TAAGA---------AAGATATTTCT 196048 || || | |||||| || | ||||| ||||| || || | || Sbjct 252897 CTTCACTAACGAGTTCAAACGCAAACACAAGAAGGTAAGAAGAACTCGCAATATGTCTCC 252956 Query 196049 GGAAATCC----------------TAGG--------------------GCTCTTCGTCGG 196072 |||| | |||| ||||| || || Sbjct 252957 CAAAATTCGTTGACTAACTCCATGTAGGACCTGACCTCCAACGCCCGCGCTCTCCGCCGT 253016 Query 196073 CTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTT 196132 || | || || || || |||||||| || || ||||||||| | || || || | Sbjct 253017 CTCCGCACCGCTTGCGAGCGTGCCAAGCGCACCCTCTCTTCTTCTGCCCAGACCTCCATC 253076 Query 196133 GAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTT 196192 ||||| || || ||| || || || |||||||| || | || |||||||| ||||| Sbjct 253077 GAGATCGACTCCCTGTACGAGGGTATCGACTTCTACACCTCGATCACCCGTGCCCGTTTC 253136 Query 196193 GAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGT 196252 || || | | || | || | ||||| || || || | || || ||| Sbjct 253137 GAGGAACTCTGCCAGGACCTCTTCCGCTCCACCATGGAGCCCGTCGAGCGCGTCCTCCGT 253196 Query 196253 GACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGT 196312 || || ||||| || |||||| ||| | || || || || || || || || |||||| Sbjct 253197 GATGCTAAGATCGACAAGTCTTCCGTTCACGAGATCGTTCTCGTCGGTGGTTCCACCCGT 253256 Query 196313 ATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACG 196372 || || ||| | || ||||| | || ||||||||| || || ||||| | Sbjct 253257 ATCCCCAAGGTCCAGAAGATGGTCTCCGACTTCTTCAACGGCAAGGAGCCCAACAAGTCC 253316 Query 196373 ATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGT 196432 |||||||| || || || ||||| || || || ||||||||||| ||||| || || ||| Sbjct 253317 ATCAACCCCGACGAGGCCGTTGCCTACGGCGCCGCCGTTCAGGCCGCTATCCTGTCTGGT 253376 Query 196433 G----TT--GACAA---TAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTA 196483 | || ||| || |||| ||||| || || || || ||||| || | Sbjct 253377 GACACTTCCTCCAAGTCTACCAACG----AGATC--CTTCTGCTCGACGTTGCGCCGCTT 253430 Query 196484 TCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACT 196543 || || ||| | || || || |||||||| |||||| | || | | ||||| || Sbjct 253431 TCTCTCGGTATCGAGACCGCCGGTGGTGTCATGACTCCTCTCATCAAGCGCAACACCACC 253490 Query 196544 ATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCAT 196603 || || || |||||| | || || || || | ||||| || || || ||||| | Sbjct 253491 ATCCCCACCAAGAAGTCTGAGGTTTTCTCCACCTTCTCCGACAACCAGCCCGGTGTCCTC 253550 Query 196604 ATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTC 196663 || || || || || || || || |||| ||||||||||| | || || || | ||| Sbjct 253551 ATCCAGGTTTACGAGGGTGAGCGTGCCCGCACAAAGGATAACAACCTGCTCGGCAAGTTC 253610 Query 196664 GATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGAT 196723 || | || || || ||| |||| ||| | |||||||| |||||| | ||| ||||||| Sbjct 253611 GAGCTTACCGGCATCCCACCTGCGCCCCGTGGTGTTCCTCAGATTGAGGTTACCTTCGAT 253670 Query 196724 ATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAA 196783 | || || || || || | |||||| | ||| || |||| | | || || | | Sbjct 253671 GTTGATGCCAACGGCATCATGAACGTCTCCGCTCTCGAGAAGGGTACCGGAAAGACCAAC 253730 Query 196784 AAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTT 196843 |||||||| || ||||| |||||||| || || || |||||||| || || || ||| || Sbjct 253731 AAGATTGTCATCACCAACGACAAGGGCCGTCTCTCCAAGGAGGAGATCGAGCGCATGCTT 253790 Query 196844 CAAGATGCGGAAAAGTACAGGGAAGAAGACGAGG 196877 || || || ||||||| || || || |||| Sbjct 253791 GCTGAGGCCGAGAAGTACAAGGCTGAGGATGAGG 253824 Score = 181 bits (200), Expect = 1e-40 Identities = 180/233 (77%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||| ||||| || || ||||| || || || || |||||||| ||||| |||| Sbjct 982541 GTGGTATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACGATCACCCTTGAGGTGGAGT 982600 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | || ||||| ||||| || |||| ||||||||| || ||||||||||| || || | Sbjct 982601 CATCCGACACTATCGACAATGTCAAGAGCAAGATTCAGGACAAGGAAGGCATCCCCCCTG 982660 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 |||||||||| ||||| || |||||||| ||||| || ||||| || || ||| | || | Sbjct 982661 ATCAGCAACGCCTTATCTTCGCTGGTAAGCAGCTAGAGGATGGTCGCACACTCTCGGACT 982720 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 |||| |||| ||||| || || || ||| | || || | || || |||||| Sbjct 982721 ACAATATTCAGAAGGAATCCACACTCCACTTGGTGCTCCGTCTCCGTGGTGGT 982773 Score = 152 bits (168), Expect = 7e-32 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 171886 ACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCC 171945 || || || || |||||||| ||||| ||||| || ||||| ||||| || |||| | Sbjct 982058 ACCGGTAAGACGATCACCCTTGAGGTGGAGTCATCCGACACTATCGACAATGTCAAGAGC 982117 Query 171946 AAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAA 172005 |||||||| || ||||||||||| || || || ||||| || | || || || || || Sbjct 982118 AAGATTCAGGACAAGGAAGGCATCCCCCCAGACCAGCAGCGCTTGATCTTCGCCGGCAAG 982177 Query 172006 CAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACAC 172065 ||||| || ||||| ||||| | | ||||||||| |||| |||||||| ||||| ||| Sbjct 982178 CAGCTCGAGGATGGTCGTACTTTGTCCGATTACAACATTCAGAAGGAGTCCACTCTTCAC 982237 Query 172066 CTTGTTCTAAGGCTTCGGGGTGGT 172089 || || || | ||||| |||||| Sbjct 982238 CTCGTCCTCCGCCTTCGTGGTGGT 982261 >seq17 Length=1134567 Score = 120 bits (132), Expect = 4e-22 Identities = 222/326 (68%), Gaps = 6/326 (2%) Strand=Plus/Minus Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721 |||||||||||||| || || || | |||||| || | || || | || || || || Sbjct 670784 AAGATGAAGGAGACCGCCGAGTCCTACATGGGCAAGAACGTCAAGAACGCCGTCGTCACC 670725 Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 || || || ||||||| || || || || ||||| || |||||||| | | ||||| Sbjct 670724 GTCCCCGCCTACTTCAACGACTCCCAGCGTCAGGCCACCAAGGACGCCGGTCAGATTGCT 670665 Query 195782 GGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTG 195841 ||||| ||| || | | |||| || || || || || || |||| || ||||| Sbjct 670664 GGTCTCAACGTCCTCCGTGTCGTCAACGAGCCTACCGCTGCCGCCCTTGCCTACGGTCTC 670605 Query 195842 GACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTT 195901 |||||| || ||| || || ||| ||||| ||||||||||| || Sbjct 670604 GACAAGGCCACCGAC------AACGTCGTCGCCGTCTACGATCTTGGTGGTGGTACATTC 670551 Query 195902 GATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGAT 195961 ||| |||| ||||| | || | ||| | ||||| || ||| | || ||||| Sbjct 670550 GATATCTCCATTCTCGAGATCCAGAACGGTGTCTTCGAGGTCAAGTCCACCAACGGTGAC 670491 Query 195962 ACTCATCTAGGTGGTGAAGATTTCGA 195987 ||||| || ||||||||||| ||||| Sbjct 670490 ACTCACCTCGGTGGTGAAGACTTCGA 670465 >seq25 Length=545876 Score = 113 bits (124), Expect = 6e-20 Identities = 241/359 (67%), Gaps = 6/359 (2%) Strand=Plus/Minus Query 195632 CCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATG 195691 |||||||| || ||| ||||||| | |||||||||||| ||| || | | | Sbjct 137294 CCCGAAGAGATCTCGGCTATGGTTCTTGGCAAGATGAAGGAGGTTGCTGAGAGCTACCTC 137235 Query 195692 GGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGA 195751 || | | || || | || || || || || || || ||||||| || | || || Sbjct 137234 GGCGAGCCCGTCAAGAACGCCGTCGTTACCGTCCCGGCCTACTTCAACGACGCTCAGCGC 137175 Query 195752 CAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAA 195811 || || |||||||| | | || || ||||| ||| ||| | | |||| ||| Sbjct 137174 GCTGCCACGAAGGACGCCGGAACCATCGCCGGTCTCAACGTTCTCCGTGTCGTCAACGAA 137115 Query 195812 CCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAA---AT 195868 || || || || || | || || || || ||||||| | ||| || | || | Sbjct 137114 CCCACCGCCGCCGCTCTCGCCTACGGCCTTGACAAGACC---GACCAAAAGGAACGCCAG 137058 Query 195869 GTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGT 195928 || | ||| ||||| ||||||||||| || || || || | |||| ||| |||| Sbjct 137057 GTTCTCGTCTACGATCTTGGTGGTGGTACTTTCGACGTTTCCATCCTCACTATCGAAGAG 136998 Query 195929 GGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 || | ||||| || || |||| || ||||| ||||| || ||||||||||||||||| Sbjct 136997 GGCGTTTTCGAGGTCCAGTCTACCGCCGGTGACACTCACCTCGGTGGTGAAGATTTCGA 136939 >seq21 Length=968111 Score = 113 bits (124), Expect = 6e-20 Identities = 218/313 (70%), Gaps = 13/313 (4%) Strand=Plus/Plus Query 198549 ATCCCACGTGGTGCTCTTCTCGCCGGTGCCCCGGGTACTGGTAAAACCCTTCTAGCTCGT 198608 || || || || ||| ||||| | ||| |||| ||||| ||||| || | || || Sbjct 87233 ATTCCCCGCGGCGCTGTTCTCTCTGGTCCCCCAGGTACCGGTAAGACATTGCTTGCCAAG 87292 Query 198609 GCTATCGCGGGTGAATCGAGTGTCCCCTTTCTTCAGTGCTCCGCGG---CGAGTTTCATC 198665 || | || || || || | || || ||||||||||| || |||| ||| || | | Sbjct 87293 GCCACAGCTGGCGAGTCTGGCGTGCC-TTTCTTCAGTG-TCAGCGGTTCCGAATT-CGTT 87349 Query 198666 GAGATGTTCGTTGGTGTTGGTGCTAAGCGCGTCCGGGAACTCTTTGAGCAAGCACGTGAA 198725 ||||||||||| ||||||||||| ||| || || || || || | | || || || Sbjct 87350 GAGATGTTCGTCGGTGTTGGTGCATCGCGAGTACGAGACCTGTTCGCCAACGCGCGC-AA 87408 Query 198726 AATCA-ACCATGTATCATCTTCATTGATGAGATTGACGCTGTTGGTAAGAAGCGT----G 198780 | || |||||||||||||||||| |||||||||||||| ||||| |||| Sbjct 87409 GAGCACACCATGTATCATCTTCATCGATGAGATTGACGCCATTGGTCGATCGCGTTCGAA 87468 Query 198781 GTGGAACTACTACACCTGGTAATGATGAGCGTGAGCAGACGATTAACCAGCTTCTCACTG 198840 | ||||| | | || || || ||||||||| ||| | |||||| | | || | Sbjct 87469 GCAGAACTTCGGTGGC-GGCAACGACGAGCGTGAGGCGACACTCAACCAGATCTTGACAG 87527 Query 198841 AGATGGATGGTTT 198853 ||||||| ||||| Sbjct 87528 AGATGGACGGTTT 87540 >seq6 Length=1689814 Score = 96.9 bits (106), Expect = 5e-15 Identities = 185/272 (68%), Gaps = 3/272 (1%) Strand=Plus/Minus Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778 ||||| || || ||||||| || || || ||||| || |||||||| | ||| || Sbjct 1388215 ACTGTCCCCGCCTACTTCAACGACAACCAGCGTCAGGCCACCAAGGACGCCGGTGCCATC 1388156 Query 195779 GCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGT 195838 || ||||| ||| || | |||||||| || || || || || || || || || ||| Sbjct 1388155 GCTGGTCTTAACGTCCTCCGTATTATCAACGAGCCTACCGCCGCCGCTATCGCCTACGGT 1388096 Query 195839 CTGGACAAGAACAAGGACGAA---GATAAAAATGTATTGATCTTTGATCTCGGTGGTGGT 195895 || | | |||| ||| || | || || | |||| |||||||||||||| Sbjct 1388095 CTCGGCTCCGGCAAGTCCGAGAAGGAGAGGAACGTCCTCATCTACGATCTCGGTGGTGGA 1388036 Query 195896 ACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCT 195955 || || ||||| || || || | || | || ||| | ||| || ||||| ||||| Sbjct 1388035 ACTTTCGATGTTTCTCTCCTTCACATCCAGGGCGGTGTCTTCACTGTCAAGGCCACTGCA 1387976 Query 195956 GGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 || ||||| || | || || ||||||| || Sbjct 1387975 GGCGATACCCACTTGGGAGGGCAAGATTTTGA 1387944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657860607324960