Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq18 138 3e-27 >seq18 Length=1111935 Score = 138 bits (152), Expect = 3e-27 Identities = 187/261 (72%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642 ||||| | ||||||||| |||||||| || || || || |||||||||||||| || Sbjct 317253 CTTGACGAGACGACGCTGGATATAACCTGTCTCAGCAGTCTTGACAGCTGTATCAATAAG 317312 Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAA 302702 ||| |||||||| |||| || |||||||| | ||| ||| || || | || | Sbjct 317313 ACCTTCACGACCAGCCATGGCGTGGAAGAAGAACTCCGAAGGTGTCAGACCGCGAAGGTA 317372 Query 302703 GGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAG 302762 |||| ||||||||||||| || | ||| ||||| | |||| ||| || || |||||||| Sbjct 317373 GGAGTTCTCAACGAAACCTCGGGACTCTGGCGAGTAGTCGTCCTTTGTGAAATGTGGCAG 317432 Query 302763 GGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCA 302822 || | || || | ||| | || ||||| | || || || |||||| || | | Sbjct 317433 AGTTCGGTACTTGAAACCGAAAGGAATACGTTGACCTTCGACAGCCTGCTGACCGACGAG 317492 Query 302823 CGAAATCATCTGCGAAATATT 302843 || | |||||| || ||||| Sbjct 317493 AGACACCATCTGAGAGATATT 317513 Score = 122 bits (134), Expect = 3e-22 Identities = 209/301 (69%), Gaps = 2/301 (1%) Strand=Plus/Plus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGC-GTCATATAGCCG 251465 || || ||||| | | || || ||||| |||| ||||| || | || | | || || Sbjct 212767 ATCAGGCCACAGATGTCGCAGACGTGGACCGTGTACGCATCCGAGACCGTGA-AGAGACG 212825 Query 251466 ACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAA 251525 ||||| ||| || |||||||| | |||||||||||||| |||||||||||||| Sbjct 212826 CTCCTTGAGGAAAGCAGCAGCACCGTGGGCGATCATACAATCACGTTCCATTTCACCGAA 212885 Query 251526 ACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGG 251585 ||| ||||||||||| ||||| | ||| ||| ||||||| || || ||| | | ||| Sbjct 212886 ACGCAGACCACCATCCCGAGCACGACCTTCGACAGGCTGGCGGGTAAGAATCTGGAGAGG 212945 Query 251586 ACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGC 251645 || | ||| || ||| || | ||||||||| | || ||||||||| ||| Sbjct 212946 TCCACGAGCACGGGCGTGAATCTTGTCGTCGACCATATGCCTTAGGCGCTGGTAGTATGT 213005 Query 251646 GGGACCGATGAAGATGCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACATAACTTC 251705 || || | |||||| || ||| | || ||||| | |||| ||||| | ||| Sbjct 213006 AGGCCCCAAGAAGATCTGCGTGCGCAGCTTCTTGCCAGTGTGGCCGTTGTACATGATTTC 213065 Query 251706 G 251706 | Sbjct 213066 G 213066 Score = 86.0 bits (94), Expect = 2e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 233272 AGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATC 233328 ||||||||| || |||||||||||||||||||||||||| | ||||||||||||||| Sbjct 212844 AGCACCGTGGGCGATCATACAATCACGTTCCATTTCACCGAAACGCAGACCACCATC 212900 Score = 84.2 bits (92), Expect = 6e-11 Identities = 112/155 (72%), Gaps = 3/155 (2%) Strand=Plus/Plus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | | ||| || ||||| | || ||||| |||||| | |||||||| Sbjct 316459 AGAATTTCCTTGAGACGTGGCACACCCAGTGTGACGTT---CTTGGAAGACACACCAGCG 316515 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || |||||||| || || || | || |||| ||||||||||| || || || | Sbjct 316516 AAATGGAAAGTGTTGAGCGTCATCTGCGTAGCGGGCTCACCAATGGACTGGGCGGCCAAG 316575 Query 301933 ATACCAACCATTTCTCCTGGTGCTACAATAGACTT 301967 | ||||||||||||||| || || ||| || ||| Sbjct 316576 ACACCAACCATTTCTCCAGGCGCGACAGCAGCCTT 316610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471813489029466