Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq9 192 7e-43 seq11 138 1e-26 seq12 131 2e-24 seq14 118 1e-20 seq3 111 2e-18 seq1 107 2e-17 >seq9 Length=1465676 Score = 192 bits (212), Expect = 7e-43 Identities = 340/496 (69%), Gaps = 15/496 (3%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||||||||||||||| || |||| ||| |||| ||||||||||| | ||| ||||| || Sbjct 1036776 CTGGTCGACGTAGCGGGCAGTGTTGTTGTAGACACGGAGCATGGGGATGAGACCGTTCGA 1036717 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 |||||||| || | | ||||| ||| | ||| || | ||| || | ||| Sbjct 1036716 TGTTCCGTTGGTTCCTCCGATGTAGGAGCCAGTGGCACGAATGCGGTGGACGTTGAGGCC 1036657 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 || ||||| || | ||||||||| | |||||| ||||| ||||||||||||||||| Sbjct 1036656 AATTCCGCCAGCAGTCTTGGAGATCAACGCGCAGGTCTTGAGTGTGTCGTAGATGCCCTC 1036597 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||| ||| |||||||||| | ||| ||||| ||||| | ||||| | ||||| Sbjct 1036596 GATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGACGACATCTGCGGCGAGGGTGTGCC 1036537 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 ||||||||||||||| |||| || ||||| ||| | |||||||| |||||| || Sbjct 1036536 GGCGTTGAAGAGCGTCGGCGAGGCGTGTGTGAAGTACTTCTGCGACATGTAGTCGTATGT 1036477 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 ||| | | | | || |||| || | || ||||| ||| || Sbjct 1036476 CTCGATGGCCTTCTCGA---TGTCCTCCATGTGG--------AT----GCCGACGGCAAC 1036432 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484 ||||||||||||| ||| || |||||| |||| |||| | | |||||| || Sbjct 1036431 ACGCATGAGCATGTGCTGCGGGCGCTCGGCGACCTTGCCGTTGATGCGGAGCAGGTATGA 1036372 Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGATGGC 1630544 || | ||| ||| ||| ||| | || || |||||||||| | |||||| Sbjct 1036371 GCGCTCGAGCGTCTTGAAGCCGAAGAACTGGTAGTTGAAGTCGCGGTCGTAGACGATGGC 1036312 Query 1630545 GGCGTCGAGGGCATCG 1630560 | || ||| ||||| Sbjct 1036311 GCTGTTGAGCTCATCG 1036296 Score = 118 bits (130), Expect = 1e-20 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 19044 GAGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGC 19103 ||||||||||| || ||||| |||||||| || |||||| || | ||| | ||| Sbjct 263209 GAGGACAGCATTGGTGGCACAGTGACGTGTGTCATCCGCAACTGTCCTACCGGCTTGGGC 263150 Query 19104 GAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCC 19163 ||||| ||||| |||||| |||||||| || || ||||| |||||||| ||||| || Sbjct 263149 GAGCCATGCTTCGACAAGCTCGAGGCCAAACTAGCACACGCTATGCTGTCCATCCCAGCT 263090 Query 19164 ACCAAGGGATTCGAGATTGG 19183 |||||||| || |||||||| Sbjct 263089 ACCAAGGGCTTTGAGATTGG 263070 Score = 114 bits (126), Expect = 2e-19 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 1628465 TCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGA 1628524 ||||||| ||||| ||||| ||||| || || ||||||||||||||||||||| ||| Sbjct 1036912 TCCACAGAGCGTAGAAGAGATCGCGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTCCTGA 1036853 Query 1628525 GGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCT 1628584 ||||||| || ||| | ||| |||||||| ||||| |||||| ||| ||||| || Sbjct 1036852 GGTCGAGGAAGCCGAAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCGG 1036793 Query 1628585 TGCGCTTGCCGCCGCC 1628600 ||||||| ||| || Sbjct 1036792 GGCGCTTGTTGCCACC 1036777 Score = 102 bits (112), Expect = 1e-15 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 1627334 GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGA 1627393 ||||||| || || || || | ||||||||||| | ||||||||| ||| | Sbjct 1037830 GGTTGACAACCTGGAACTCACCAGCAAGCACGCGGCGAGAGTAGATGTTCGATGTGTAGG 1037771 Query 1627394 CCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCA 1627453 |||| | |||| ||||||| || ||||| || || | ||| || |||||| |||| | Sbjct 1037770 GCTCGAAGCACTCGTTGTTGCCGAGAATCTGGGAGGTGGAGGCAGTAGGCATGGGCGCGA 1037711 Query 1627454 CGAGGAGCGAGTTGCGCAGGCCGTGCTGTCGAACTAGCGCGCGCAGCGCGTCCCAGTCCC 1627513 |||| ||||||||||| | |||||||| || ||| |||||| |||||||||| Sbjct 1037710 CGAGTAGCGAGTTGCGGACACCGTGCTGAGCAATCTTCGCCTTCAGCGCCTCCCAGTCCC 1037651 Query 1627514 A 1627514 | Sbjct 1037650 A 1037650 Score = 87.8 bits (96), Expect = 2e-11 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 1628162 ACTGGACGATCTCGGTGCACAGGTTGG-CCGACGTCGTCGTACCCAGGTTCTGCTGGTTG 1628220 ||| || ||| || ||||||||||||| | || | ||||| ||||||| ||||||| Sbjct 1037215 ACTCGATGATTTCAGTGCACAGGTTGGAGCTGCG-GATGGTACCAAGGTTCTTCTGGTTG 1037157 Query 1628221 GTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCC 1628280 | || |||| | || ||||||| ||||||| |||| ||||||||| |||| ||| Sbjct 1037156 CTCTTCCTGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTACCGGTCTCGGTCTGAGCC 1037097 Query 1628281 GCGACGATGGCCGACCAGATCT 1628302 ||| ||||| |||||| || Sbjct 1037096 TCGAGAATGGCGTACCAGAGCT 1037075 >seq11 Length=1322403 Score = 138 bits (152), Expect = 1e-26 Identities = 216/305 (71%), Gaps = 3/305 (1%) Strand=Plus/Plus Query 1573968 GAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGTCGTGCGCAAGATC 1574027 || ||||| ||||| ||||| || || || || |||||| |||||||||| || || | Sbjct 1216629 GAAGCCGTACTCGAGCTCAATGCCTCCGATGAACGCGGCATCGACGTCGTACGAAACAGG 1216688 Query 1574028 ATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCGGACGCCACAAGGTGATCATC 1574087 || || | ||| |||| || ||||| || || || || ||| | ||||| Sbjct 1216689 ATAAAAGGCTTCGCGCAGAAGAAAGTCACACTGCCTCCTGGCCGGCAAAAGCTCGTCATC 1216748 Query 1574088 CTCGACGAGGCCGACTGCCTCAC-GTCGGCGGCCCAGCAGGCCCTGCGGTCCACCATGGA 1574146 |||||||| || ||| || | || |||| |||||||| |||||||| |||||||| Sbjct 1216749 CTCGACGAAGCAGACAGCATGACTAGCGGC-GCCCAGCAAGCCCTGCGTCGAACCATGGA 1216807 Query 1574147 AAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTCGTCGATGGTCATCGA 1574206 || ||| | |||||| ||||| || | || ||||| ||| | | ||||||| Sbjct 1216808 AATTTACAGCGCCACGACTCGCTTCGCATTCGCATGCAATCAGTCCAACAAGATCATCGA 1216867 Query 1574207 GGCCCTCCAAAGTCGCTGCGCCATTCTGCGCTTTGTGCGCCTGGGTGACGCCCAGATACG 1574266 | |||||||| ||||||||||| ||||||| | ||||| ||||||||| | || Sbjct 1216868 GCCCCTCCAATCCCGCTGCGCCATCCTGCGCTACGCCCGCCTCACAGACGCCCAGGT-CG 1216926 Query 1574267 CGCGC 1574271 |||| Sbjct 1216927 TGCGC 1216931 >seq12 Length=1302950 Score = 131 bits (144), Expect = 2e-24 Identities = 98/115 (85%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || ||||||||||||||||||||| | || ||||| | || |||||| |||| |||||| Sbjct 1019571 GCTGCCAACTACCTCGACATCAAGGCCCTCCTCGACGTCGGCTGCAAGACTGTTGCCAAC 1019630 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||||||||||||||| || || |||||||| |||||||| |||||| || ||| Sbjct 1019631 ATGATCAAGGGCAAGTCCCCGGACGAGATCCGTAAGACCTTCAACATCCAGAACG 1019685 >seq14 Length=1191321 Score = 118 bits (130), Expect = 1e-20 Identities = 181/256 (71%), Gaps = 3/256 (1%) Strand=Plus/Minus Query 869635 GTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGGAC 869694 ||||| |||||| || ||||||||||||||| ||| | |||| | | ||| || Sbjct 900507 GTGGACGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGGGCCTCGGGGATTTGAAC 900448 Query 869695 CTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAA 869754 ||| ||| || || | ||||||||| || ||||| ||| ||||||||| || Sbjct 900447 CTCGCCGGAGAAGCGCTCGACAAGGTTCTCGTTGACAATGCCATCGGAGGCGGCGAAGAA 900388 Query 869755 AGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGA-GCGAC--ACCCAGTGGAC 869811 || || ||||| ||| ||| |||||||||||| ||| ||| | ||||| | Sbjct 900387 GGCGAGAACGTGGGAGATGAAGAAGCGCTCGTCGTCATTGAGGCGCCTGTTCCAGTCGTG 900328 Query 869812 GGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 ||| | ||| || | |||||| |||||||||| || ||||||||||| ||||| Sbjct 900327 AAGGTCCTTGGAGAGATCGATCTCCTCAGCGGTCCAGAAAGAAGCCTCGGCCTTCTTGTA 900268 Query 869872 CATCTCCCATACTTGC 869887 ||||| ||| || ||| Sbjct 900267 CATCTGCCAGACCTGC 900252 Score = 116 bits (128), Expect = 5e-20 Identities = 171/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || ||| |||||| || ||||||||||| ||||||| || Sbjct 901156 GCCTTCTGGTAGTCACCGACACGCTTCTCGAAGAAATTGGTCTTGCCGGCGAGCGAAATG 901097 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | ||||||| ||| | || || | | | Sbjct 901096 TTCTCCATGAAATCGAAGGGGTTGGTAGCGTTGTAGTACTTGGGGTTGCCAAGGGCCAAG 901037 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||| ||||| || || |||||||||||||| |||||||| |||||||||||||| Sbjct 901036 AGCAGACGGTCAGCAACGAACTCGATGTACTGACACATGAGTGTGGCGTTCATGCCGAGC 900977 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || || || | || || ||||| | |||||| ||| |||||| |||| Sbjct 900976 AGAGCACAGGGAAGAGCGTCTGACAGGAACTCCTGCTCGATTGTGACAGCCTCGGTGATG 900917 Query 868931 AT 868932 || Sbjct 900916 AT 900915 >seq3 Length=1874557 Score = 111 bits (122), Expect = 2e-18 Identities = 153/209 (73%), Gaps = 5/209 (2%) Strand=Plus/Plus Query 1852046 ATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGCTCTCGGTGAGGCCCGGCACGAGC 1852105 ||||||||| ||| || ||||||||||||||| | || | || || || || | Sbjct 1683150 ATCTTGGAGTCGGGGTCTGAGGCGCTCATCTTGCCTC-CTTGCAGA--CCAGGAACCATG 1683206 Query 1852106 GGGTTGA-GCAGGTGGAAGCGCTTCCGATAGCCGAGGACCGGCAGGTGGTCGCGCGCAAA 1852164 ||||| | |||| ||| ||||| | ||||||| || ||| ||| |||| Sbjct 1683207 GGGTTCATGCAG-TGGGCGCGCTCCTTGTAGCCGATCTTGGGGAGGATGTCCTTTGCAAG 1683265 Query 1852165 GGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTC 1852224 ||| || ||||||||||||||| || || ||||| || || ||||||| |||||| Sbjct 1683266 GGCGAAGATCTTGCGCTGGTCGACACCACCGAACTGCATATCAACATCGAGGTACTGCTC 1683325 Query 1852225 GTCGAGGGCCTGCATGAGCGGGTAGAGCA 1852253 ||| || |||||||||||||||||||||| Sbjct 1683326 GTCAAGAGCCTGCATGAGCGGGTAGAGCA 1683354 >seq1 Length=2699176 Score = 107 bits (118), Expect = 2e-17 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 1254380 GGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGC 1254439 ||||||||||||||||| | ||| ||| |||||| || || || | ||| Sbjct 352831 GGTCTGGATCTCGCGCGAGGAGATGGTGGACTTCTTGTTGTAGGCAGCGAGCTTGGAGGC 352890 Query 1254440 CTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTT 1254499 ||||||| ||| ||| |||| ||||||||||| |||||||||| || ||||| | Sbjct 352891 CTCGGTGGCGACGCGCTCGAAGATGTCGTTGACGAACGAGTTCAGGATGGACATGGCGCG 352950 Query 1254500 GTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1254538 ||||||||| || ||||||||| ||||||||||| || Sbjct 352951 GTTGGAGATACCGGTGTCGGGGTGGACCTGCTTGAGGAC 352989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107121309899106