Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq9 192 5e-44 seq4 107 2e-18 seq13 82.4 7e-11 >seq9 Length=1465676 Score = 192 bits (212), Expect = 5e-44 Identities = 481/717 (67%), Gaps = 19/717 (3%) Strand=Plus/Minus Query 139302 CTCGTACTTTTCGTAGAGTTCGTCGAA-TCGTTCACCGTAGGCGTCAGAAAGATCGCGAC 139360 ||||||||| ||||| || || |||| |||| |||||||| |||||| || | | | Sbjct 1037037 CTCGTACTTCTCGTACAGGGCGACGAACTCGT-CACCGTAGACGTCAGCGAGGCCAGGGC 1036979 Query 139361 ACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGAT 139420 ||| || || |||||||| | ||| |||||||| || ||| ||| |||||| |||| Sbjct 1036978 ACTCGTTGGGGCACATGAGTGTCCACTCGCCGTTCTGCTGGACACGCTCCATGAAGAGAT 1036919 Query 139421 CCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTAC 139480 | || ||||||| |||| | | | |||||| || || ||| || ||| Sbjct 1036918 CGGGGATCCACAGAGCGTAGAAGAGATCGCGGGCGCGAACCTCCTCCTTGCCGTGGTTCT 1036859 Query 139481 GTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTG 139540 | | || ||||| | || ||||||||||||||||| || || |||||||| | | Sbjct 1036858 TCCTGAGGTCGAGGAAGCCGAAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGG 1036799 Query 139541 CGCCTTTCCGTTTG---CCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCA 139597 | || || ||| ||||| || ||||||| || ||| || ||| | || || | Sbjct 1036798 CACCGGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGGGCAGTGTTGTTGTAGACACGGA 1036739 Query 139598 ACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATG--GGA-CTGTTGCGAG 139654 ||| || |||||| ||| |||||||||||| | | |||| ||| | || | Sbjct 1036738 GCATGGGGATGAGACCGTTCGATGTTCCGTTGGTTCCTCCGATGTAGGAGCCAGTG---G 1036682 Query 139655 CTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCA-A 139713 | || | | || || |||| ||| |||||||| || ||||| || || |||| Sbjct 1036681 CACGAATGCGGTGGACGTTGAGGCCAATTCCGCCAGCAGTCTTGGAGATCAACGCGCAGG 1036622 Query 139714 TCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCAT 139773 || | | ||| ||||| || || |||||||| |||| ||| || || ||||| Sbjct 1036621 TCTTG-AGTGTGTCGTAGATGCCCTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCAG 1036563 Query 139774 GACGAAAGTTGCGG-TAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAA 139832 ||||| | ||||| || | |||||||| || || || || ||||| ||||| Sbjct 1036562 GACGACATCTGCGGCGAGGGT-GTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGTGTGAA 1036504 Query 139833 CATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCC--GTGG 139890 | | |||||| | ||||| || |||||||| || | || ||| ||| |||| Sbjct 1036503 GTACTTCTGCGACATGTAGTCGTATGTCTCGATGGCCTTCTCGATGTCC--TCCATGTGG 1036446 Query 139891 ATACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtt 139950 || ||||| | || ||||| ||||| || || || ||||| ||| ||| | ||| Sbjct 1036445 ATGCCGACGGCAACACGCATGAGCATGTGCTGCGGGCGCTCGGCGACCTTGCCGTTGATG 1036386 Query 139951 tttttCAGATAACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATCG 140007 ||| || | ||| || |||||| |||| ||| || |||||||| ||| Sbjct 1036385 CGGAGCAGGTATGAGCGCTCGAGCGTCTTGAAGCCGAAGAACTGGTAGTTGAAGTCG 1036329 >seq4 Length=1699079 Score = 107 bits (118), Expect = 2e-18 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || || || || || | || Sbjct 982546 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACGATCACCCTTGAGGTGGAGTCATCC 982605 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| ||||| || || || ||||| Sbjct 982606 GACACTATCGACAATGTCAAGAGCAAGATTCAGGACAAGGAAGGCATCCCCCCTGATCAG 982665 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881 ||||| | ||||| || || || ||||| |||||| ||| | || | || || || | Sbjct 982666 CAACGCCTTATCTTCGCTGGTAAGCAGCTAGAGGATGGTCG-CACAC-TCTCGGACTACA 982723 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTG 24913 | ||||| |||||||| ||||| ||||||||| Sbjct 982724 ATATTCAGAAGGAATCCACACTCCACTTGGTG 982755 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 ||||| || || || || ||||| || || || |||| || | || | || || Sbjct 982342 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCCGATACCATTGACAACGTCAAGTCG 982401 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||||||||| || || || ||||| ||||| || ||| |||| || || || || Sbjct 982402 AAGATCCAAGACAAGGAGGGTATCCCTCCAGATCAGCAGCGTCTGATTTTCGCTGGCAAG 982461 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 || || |||||| | | | |||| || || ||||| || ||||| || ||||| || Sbjct 982462 CAACTTGAGGATGGCCGTACCTTGTCCGACTACAACATCCAGAAGGAGTCCACACTGCAT 982521 Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930 | || |||| ||||||| || Sbjct 982522 CTCGTCCTGCGCCTGCGCGGTGG 982544 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || || || ||||| || || || || | || || || ||| | Sbjct 982774 ATGCAAATTTTTGTCAAGACCCTCACCGGCAAGACCATCACATTGGAGGTCGAGTCCAGC 982833 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| ||||| || || || || || || ||||| || || Sbjct 982834 GACACGATCGACAACGTAAAGTCTAAGATTCAGGATAAGGAGGGCATCCCTCCTGACCAG 982893 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| | ||||||||||| || ||| |||| || | | | || || |||||| Sbjct 982894 CAACGCCTCATCTTTGCCGGCAAGCAGTTGGAAGACGGTCGCACGCTTTCCGACTATAAC 982953 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || || ||||| ||||| || ||||||||| Sbjct 982954 ATCCAGAAGGAGTCGACGCTGCACTTGGTG 982983 >seq13 Length=1247346 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||| ||||| || || || || || || || || || |||||||||||||| || Sbjct 565471 AAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCTTGATCTTTGCCGGCAAG 565530 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 ||||| ||||| | | | | || || || ||||| || ||||| ||||| || ||| Sbjct 565531 CAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCGACTCTCCAC 565590 Query 24908 TTGGT 24912 |||| Sbjct 565591 CTGGT 565595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449896374029040