Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq19 107 2e-18 >seq19 Length=1048908 Score = 107 bits (118), Expect = 2e-18 Identities = 233/345 (68%), Gaps = 4/345 (1%) Strand=Plus/Minus Query 34313 TGAGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCAT 34372 ||| ||| ||||| ||||| | || | | || | ||||||||| ||||| |||| Sbjct 679905 TGACCTCGGTCTCGGGGTTCTTGCACTTCTTGCAGAGAACAAACTTGGAAATGAAGCCAT 679846 Query 34373 CAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTT 34432 | || ||||||| ||| | | ||||| | ||||||| ||| | || |||| | Sbjct 679845 CGAGGTAATCCTGTAGCTTGGCAGCATCGTGAGCACCGTTGATGATCCAGCGGTCGTCGT 679786 Query 34433 TGTAA-TCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATG 34491 || | | || || || || || |||||| | ||||||||||| | || | Sbjct 679785 TGGGGCTAGTGTTG-GTCTGAGCACCAAGCTCGAAGCCGAAGTACTTGATGACGTGAGCC 679727 Query 34492 GCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCG 34551 | ||||| | || | ||||| | || | |||||||||||| ||||||||||| Sbjct 679726 GGAGGACGAGCCAGAGAGTTGGCAACACTGGTTAGGTTGACGATGACGGTCTTGATGCCA 679667 Query 34552 TTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCC 34611 || ||||| || || | ||||| || ||| ||| |||||||||||||| | ||| Sbjct 679666 TTACCCTTGCCCTCAATCTTGGACTGGAGACGCTCCATCTTGTAGCGGTAGAAGGGGTCG 679607 Query 34612 GCCACATTGCGGTTAACGTTCACAGTCCCCATCGTGGC--TGGTG 34654 | |||| |||| || ||| || || |||| || || ||||| Sbjct 679606 GTGACATCGCGGCGAATGTTGACGGTAGCCATGGTTGCGTTGGTG 679562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412840503131474