Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq9 154 2e-31 seq3 132 8e-25 seq12 127 3e-23 seq14 116 6e-20 seq1 105 1e-16 >seq9 Length=1465676 Score = 154 bits (170), Expect = 2e-31 Identities = 190/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||| ||||| || |||| ||| |||| ||||||||||| | || ||||| || Sbjct 1036776 CTGGTCGACGTAGCGGGCAGTGTTGTTGTAGACACGGAGCATGGGGATGAGACCGTTCGA 1036717 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 |||||||| || | | ||||| ||| | ||| || | ||| || | ||| Sbjct 1036716 TGTTCCGTTGGTTCCTCCGATGTAGGAGCCAGTGGCACGAATGCGGTGGACGTTGAGGCC 1036657 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 || ||||| || | ||||||||| | |||||| | || || || |||||||||||||| Sbjct 1036656 AATTCCGCCAGCAGTCTTGGAGATCAACGCGCAGGTCTTGAGTGTGTCGTAGATGCCCTC 1036597 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||| ||| |||||||||| | || ||||| ||||| | ||||| | ||||| Sbjct 1036596 GATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGACGACATCTGCGGCGAGGGTGTGCC 1036537 Query 2073780 GGCATTGAAGAGCGTGGGCG 2073799 ||| ||||||||||| |||| Sbjct 1036536 GGCGTTGAAGAGCGTCGGCG 1036517 Score = 122 bits (134), Expect = 1e-21 Identities = 294/446 (66%), Gaps = 14/446 (3%) Strand=Plus/Minus Query 2071574 ACTGGACGACCTCGGTGCACAGGTTGGCCGACATCG--TGGTGCCCAGGTTCTGCTGGTT 2071631 ||| || || || ||||||||||||| | || |||| || ||||||| |||||| Sbjct 1037215 ACTCGATGATTTCAGTGCACAGGTTGGAG--CTGCGGATGGTACCAAGGTTCTTCTGGTT 1037158 Query 2071632 GCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGC 2071691 ||| || |||| | || ||||||| |||||| |||| ||| |||||| |||| || Sbjct 1037157 GCTCTTCCTGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTACCGGTCTCGGTCTGAGC 1037098 Query 2071692 CGTGACGATGGCCGACCAAA--TTTGGCGCGCGGGCACCGAGGTC-CTCGCGCG--GCCC 2071746 | || ||||| |||| | || | || ||| || ||| | || | |||| Sbjct 1037097 CTCGAGAATGGCGTACCAGAGCTTCTGAGCACGGACA-----GTCTCACGACCCTTGCCC 1037043 Query 2071747 TNNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCG 2071806 | |||||| | || || | |||| | || ||||| Sbjct 1037042 GCTTTCTCGTACTTCTCGTACAGGGCGACGAACTCGTCACCGTAGACGTCAGCGAGGCCA 1036983 Query 2071807 GGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAAC 2071866 || |||| ||||| | ||| | ||| |||||| | || || ||| || Sbjct 1036982 GGGCACTCGTTGGGGCACATGAGTGTCCACTCGCCGTTCTGCTGGACACGCTCCATGAAG 1036923 Query 2071867 AGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGG 2071926 || ||| ||||||| |||| ||||||||||| || || |||||||||||||||| Sbjct 1036922 AGATCGGGGATCCACAGAGCGTAGAAGAGATCGCGGGCGCGAACCTCCTCCTTGCCGTGG 1036863 Query 2071927 TTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCA 2071986 ||||| | |||||||| || ||| || ||| |||||||| ||||| |||||| ||| Sbjct 1036862 TTCTTCCTGAGGTCGAGGAAGCCGAAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCG 1036803 Query 2071987 AAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 ||||| || ||||||| ||| || Sbjct 1036802 AAGGCACCGGGGCGCTTGTTGCCACC 1036777 Score = 98.7 bits (108), Expect = 2e-14 Identities = 348/537 (65%), Gaps = 14/537 (3%) Strand=Plus/Minus Query 2069251 TGGTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCG 2069310 |||||||| || ||||| |||| | |||| | ||| || || |||||||||||| Sbjct 1038176 TGGTCGACAGTGAACTGAATGGGTGCAGAAGCAGCCATGGTACGGAGGTAGTACATGCCG 1038117 Query 2069311 GTCTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATGGACTCGGCATTCGG- 2069369 |||||||| ||| | ||| | | |||||| || ||||| || | | | | Sbjct 1038116 GTCTTGAGACCGAGCTTCCAGCCAGCGAAGTGCATGGATGTGAT---CTTGCCCATAGTA 1038060 Query 2069370 GACGGCA-CA-GTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCC 2069427 | | | || || || ||| || ||||| ||| |||| ||| | ||||| || Sbjct 1038059 GGCTCCTTCATGTGGATGTTCAGGGACTGAGACTGATCGATGAAGGCACCACGGTCAGCG 1038000 Query 2069428 GCCATGTCGATGGTCACGCGGTTGGACACCTCCCACACGGTCTTGAACAGGGCCTTGAGA 2069487 ||||| | |||| | || | || | |||||| ||||||||| |||| | ||||| Sbjct 1037999 GCCATCTGGATGATGGTACGCTGCGAGATCTCCCAGACGGTCTTGTACAGAGTCTTGATC 1037940 Query 2069488 TGCGGC-GGCACCTCGTCGTCATCAAAGCCCTGCACCGAGCCCTGCGCTGCGATGAGGCG 2069546 | || | || | | | | | || ||| | || || | | ||||||| ||| Sbjct 1037939 T-CGTCAGGGATGTTGGGG------ATGCGCTGAATGGAACCACCCTCAGCGATGATGCG 1037887 Query 2069547 GTCGCGAAAGTCGGGCGTCCACAGGCCGCGCGCCATCATGCGCTCGACCAGGTGGCGGTT 2069606 || | || ||||| || || | | || | || || || | |||| Sbjct 1037886 GTTCTTCATGTTCTCGGTCCAGAGACCCATGTCGACCAGGTCCTTGAGCAACCAGGGGTT 1037827 Query 2069607 GACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACCTC 2069666 ||| || || || || | ||||||||||| | ||||||||| ||| | ||| Sbjct 1037826 GACAACCTGGAACTCACCAGCAAGCACGCGGCGAGAGTAGATGTTCGATGTGTAGGGCTC 1037767 Query 2069667 GCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAG 2069726 | | |||| ||||||| || ||||| || || | ||| || |||||| |||| ||||| Sbjct 1037766 GAAGCACTCGTTGTTGCCGAGAATCTGGGAGGTGGAGGCAGTAGGCATGGGCGCGACGAG 1037707 Query 2069727 CAGCGAGTTGCGCAGGCCGTACTGTCGCACCAGCGCCCGCAGGGCGTCCCAGTCCCA 2069783 ||||||||||| | |||| ||| | | |||| ||| || ||||||||||| Sbjct 1037706 TAGCGAGTTGCGGACACCGTGCTGAGCAATCTTCGCCTTCAGCGCCTCCCAGTCCCA 1037650 >seq3 Length=1874557 Score = 132 bits (146), Expect = 8e-25 Identities = 164/219 (75%), Gaps = 8/219 (4%) Strand=Plus/Plus Query 2411379 GTCGAGA---TCAATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGTCCTTGGTGAG 2411435 ||||||| |||||||||||| ||| || ||||||||||||||| |||||| || Sbjct 1683137 GTCGAGAACGTCAATCTTGGAGTCGGGGTCTGAGGCGCTCATCTTGCC-TCCTTGCAGA- 1683194 Query 2411436 GCCCGGCACCAGCGGGTTGA-GCAGGTGGATGCGCTTGCGGTAGCCCAGCGCCGGCAGGT 2411494 || || |||| ||||| | |||| ||| ||||| |||||| | | || ||| Sbjct 1683195 -CCAGGAACCATGGGGTTCATGCAG-TGGGCGCGCTCCTTGTAGCCGATCTTGGGGAGGA 1683252 Query 2411495 GGTCGCGCGCAAAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGT 2411554 ||| |||| ||| |||||||||||||||||| || || ||||| || || | Sbjct 1683253 TGTCCTTTGCAAGGGCGAAGATCTTGCGCTGGTCGACACCACCGAACTGCATATCAACAT 1683312 Query 2411555 CGAGGTGCTGCTCGTCGAGGGCCTGCATGAGCGGGTAGA 2411593 |||||| ||||||||| || ||||||||||||||||||| Sbjct 1683313 CGAGGTACTGCTCGTCAAGAGCCTGCATGAGCGGGTAGA 1683351 >seq12 Length=1302950 Score = 127 bits (140), Expect = 3e-23 Identities = 97/115 (84%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 || ||||||||||||||||||||| |||||||||| | || |||||||| || |||||| Sbjct 1019571 GCTGCCAACTACCTCGACATCAAGGCCCTCCTCGACGTCGGCTGCAAGACTGTTGCCAAC 1019630 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761 | |||||||||||||| || || || ||||| |||||||| |||||| || ||| Sbjct 1019631 ATGATCAAGGGCAAGTCCCCGGACGAGATCCGTAAGACCTTCAACATCCAGAACG 1019685 >seq14 Length=1191321 Score = 116 bits (128), Expect = 6e-20 Identities = 178/252 (71%), Gaps = 4/252 (2%) Strand=Plus/Minus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || || || || ||| |||||| || ||||||||||| ||| Sbjct 901164 TGACACCGGCCTTCTGGTAGTCACCGACACGCTTCTCGAAGAAATTGGTCTTGCCGGCGA 901105 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 |||| || |||||| | ||| ||||||| | ||||| ||| | || | Sbjct 901104 GCGAAATGTTCTCCATGAAATCGAAGGGGTTGGTAGCGTTGTAGTACTTGGGGTTGCCAA 901045 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | | ||||| ||||| || ||||| || |||||||| |||||||| | |||||||| Sbjct 901044 GGGCCAAGAGCAGACGGTCAGCAACGAACTCGATGTACTGACACATGAGTGTGGCGTTCA 900985 Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACA--AACTCTTTCTCGATCTCGACGGC 794128 |||||| || || ||| || | | |||||| ||||| | |||||| ||| || Sbjct 900984 TGCCGAGCAGAGCACAGGGAAGAGCGT--CTGACAGGAACTCCTGCTCGATTGTGACAGC 900927 Query 794129 CTCGATGATGAT 794140 |||| ||||||| Sbjct 900926 CTCGGTGATGAT 900915 Score = 111 bits (122), Expect = 2e-18 Identities = 154/215 (72%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 796141 AAACACCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCC 796200 || || | ||||||||| | ||| ||||| |||||| || | |||||||| Sbjct 900473 AAGCAACGGGCCTCGGGGATTTGAACCTCGCCGGAGAAGCGCTCGACAAGGTTCTCGTTG 900414 Query 796201 ACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCG 796260 || ||||| ||| ||||||||| |||||||| ||||| ||| ||| ||||||||| Sbjct 900413 ACAATGCCATCGGAGGCGGCGAAGAAGGCGAGAACGTGGGAGATGAAGAAGCGCTCGTCG 900354 Query 796261 TCGCTGA---GCGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTC 796317 || ||| || | ||||| | ||| | ||| |||| |||||| |||||| Sbjct 900353 TCATTGAGGCGCCTGTTCCAGTCGTGAAGGTCCTTGGAGAGATCGATCTCCTCAGCGGTC 900294 Query 796318 CAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCA 796352 || || || ||||||||||| |||||||||| ||| Sbjct 900293 CAGAAAGAAGCCTCGGCCTTCTTGTACATCTGCCA 900259 >seq1 Length=2699176 Score = 105 bits (116), Expect = 1e-16 Identities = 121/160 (76%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 1485546 GGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC-GCCAGGCGGCCGG 1485604 ||||||||||||||| | | ||| ||| |||||| || || || || | || Sbjct 352831 GGTCTGGATCTCGCGCGAGGAGATGGTGGACTTCTTGTT-GTAGGCAGCGAGCTTGGAGG 352889 Query 1485605 CCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGATT 1485664 |||||||| ||| ||| |||| ||||||||||| |||||||||| ||| ||||| | Sbjct 352890 CCTCGGTGGCGACGCGCTCGAAGATGTCGTTGACGAACGAGTTCAGGATGGACATGGCGC 352949 Query 1485665 TGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 ||||||||| || ||||||||| ||||||||||| || Sbjct 352950 GGTTGGAGATACCGGTGTCGGGGTGGACCTGCTTGAGGAC 352989 Score = 95.1 bits (104), Expect = 2e-13 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||||||||| |||||||||||| ||||||| || ||| ||| Sbjct 352701 GTACTTGGTGACGGCCTTGGTACCCTCAGAGACGGCGTGCTTGGCCAGCTCACCGGGCAG 352760 Query 1485531 GATCAGGCGCAC 1485542 |||||| || || Sbjct 352761 GATCAGTCGTAC 352772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916223210345702