Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq4 123 5e-23 >seq4 Length=1699079 Score = 123 bits (136), Expect = 5e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || ||||| || || ||||| ||||| ||||| || || | Sbjct 982774 TACCACCACGGAGACGGAGCACCAAGTGGAGTGTGGATTCCTTCTGAATATTGTAGTCCG 982715 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||| || ||||| || || ||||| ||||| || | ||| ||||| || | Sbjct 982714 AGAGTGTGCGACCATCCTCTAGCTGCTTACCAGCGAAGATAAGGCGTTGCTGATCAGGGG 982655 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTT-ACATTTTCAATCGTATCATTAGGTTCT 82760 | || |||||||| || |||||||| ||| || ||||| || || || || | || Sbjct 982654 GGATGCCTTCCTTGTCCTGAATCTT-GCTCTTGACATTGTCGATAGTGTCGGATGACTCC 982596 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | || ||||||||||| || | ||||| || || |||||||| Sbjct 982595 ACCTCAAGGGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 982546 Score = 95.1 bits (104), Expect = 2e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||||| || | ||||| || || || ||||| || || || || | Sbjct 982546 TACCACCGCGCAGGCGCAGGACGAGATGCAGTGTGGACTCCTTCTGGATGTTGTAGTCGG 982487 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | || || || ||||| || ||||| || || || | || |||||||||| Sbjct 982486 ACAAGGTACGGCCATCCTCAAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGATCTGGAG 982427 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| ||||| ||||| | || || || ||||| ||||| | || | Sbjct 982426 GGATACCCTCCTTGTCTTGGATCTTCGACTTGACGTTGTCAATGGTATCGGAGGACTCGA 982367 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCA 82788 | || | ||| || |||||||| |||| Sbjct 982366 CCTCGAGAGTGATGGTCTTGCCGGTCA 982340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981824457633902