Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq9 275 6e-69 seq14 125 7e-24 seq4 116 4e-21 seq20 87.8 2e-12 >seq9 Length=1465676 Score = 275 bits (304), Expect = 6e-69 Identities = 1121/1745 (64%), Gaps = 49/1745 (3%) Strand=Plus/Minus Query 148053 GACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGA--GT-CGCTTT 148109 ||||| ||| || ||||| || ||||||||||||||||| | |||| || |||| Sbjct 1038035 GACTGAGACTGATCGATGAAGGCACCACGGTCAGCGGCCATCTGGATGATGGTACGCTG- 1037977 Query 148110 ATCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATG 148169 | ||||||||| | ||||||||||| |||||| | || || ||| | |||| Sbjct 1037976 --CGAGATCTCCCAGACGGTCTTGTACAGAGTCTTGATCTCGTCAGGGATGTTGGGGATG 1037919 Query 148170 CGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTG 148229 ||||| | || || | | || | || | || ||| | || || | || Sbjct 1037918 CGCTGAATGGAACCACCCTCAGCGATGATGCGGTTCTTCATGTTCTCGGTCCAGAGACCC 1037859 Query 148230 AGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACG 148289 | |||| |||||| | || || | | || || ||||| ||||| || || |||||| Sbjct 1037858 ATGTCGACCAGGTCCTTGAGCAACCAGGGGTTGACAACCTGGAACTCACCAGCAAGCACG 1037799 Query 148290 CGCCGCAGA-TACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTG 148348 || || ||| || | ||| || | || || || ||||||||||||| | |||||| Sbjct 1037798 CGGCG-AGAGTAGATGTTCGATGTGTAGGGCTCGAAGCACTCGTTGTTGCCGAGAATCTG 1037740 Query 148349 CGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTT 148408 | ||| | || || |||||| ||| || || ||||||||||| | |||| | | Sbjct 1037739 GGAGGTGGAGGCAGTAGGCATGGGCGCGACGAGTAGCGAGTTGCGGACACCGTGCTGAGC 1037680 Query 148409 TATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAG--CGGCGACGGTGTCACGTTCCACATG 148466 || || |||||| ||| |||||||||| || ||| | || | ||| ||||| | Sbjct 1037679 AATCTTCGCCTTCAGCGCCTCCCAGTCCCAAAGATCGGTG--GGCTTGACGCCCCACAGG 1037622 Query 148467 TCGTACTGCAGAATGCCGCGGCTAGCGGGGCT-GCCCTCGTACGAGCTGTACGGTCCGTG 148525 || ||||| || || | || |||| |||||| || | ||| || || | Sbjct 1037621 TCATACTGAAGCTCACCCTTGG-AGATGGGCGAGCCCTCATATGTCTCGTAGGGGCCAAG 1037563 Query 148526 CGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTG 148585 | || || | |||||| | | ||| ||| ||| || || ||| || | Sbjct 1037562 CTCCTTAGCAATGTCGCAGGAGGAGGTCAAAGCGGCGTGGTAGATGGTTTCGAAGATCTT 1037503 Query 148586 CCTGTTGAGCAGCGCCGCC----GACTCGCTTTCGTACGGCATACGCAGCCGCACAAACG 148641 |||||||| | || || | ||| | |||| || || | || | Sbjct 1037502 GATGTTGAGCTCCTTGGCTTCAGGAGAC----TCGAAAGGCAGGCGGAGAGCAAGGAAAG 1037447 Query 148642 CGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCG 148701 | || ||||| ||||| || || | |||||||| | ||| | |||| | |||| | Sbjct 1037446 CATCAGCAAGACCCTGGACACCGAGACCAATGGGTCTGTGACGGAAGTTGCTGCGGCGTG 1037387 Query 148702 CGCTCTCGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGC------ACCA 148755 | ||||| || ||||||||| ||||||||||||| || || || ||| Sbjct 1037386 CCTCCTCGACGGGGTAGTGGTTGACCTCGATGATCTTGTTGAGGTTACGTGTGCAGACCT 1037327 Query 148756 CCAC--CTTTGTAATTCTGCGCAGCAATTCAAAATCGTA---CTTGTCATCTACGATGCA 148810 || | | || | || | | || || || ||| |||| || |||| | | Sbjct 1037326 GAACGACATCGTGAAGCTTCT--GGAAGTCGAACTCGCCGCGCTTGAAGTCAACGAAGGA 1037269 Query 148811 TCGGTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTC 148870 || | || | |||||| || ||||| || || |||||| || || ||||||| Sbjct 1037268 GGGG---AGAGCAACAGAGGCCAGGTTGCAGACAGCGACCTCATCGGGAGCAGTGTACTC 1037212 Query 148871 TACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTT 148930 | ||| || | |||||| ||| || ||| || | |||||| || |||||||| Sbjct 1037211 GATGATTTCAGTGCACAGGTTGGAGCTGCGGATGGTACCAAGGTTCTTCTGGTTGCTCTT 1037152 Query 148931 GCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCAC 148990 |||||| || |||||||| |||||| | || || || || ||| | || | Sbjct 1037151 CCTGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTACCGGTCTCGGTCTGAGCCTCGAG 1037092 Query 148991 TATGAACCGATGCAGGTC--CTGCGCGCGCACTTGCTGCTCGTAGCGA-CCCTCCTGCTC 149047 ||| || ||| | ||| || || || || | || | ||| | | ||| Sbjct 1037091 AATGG--CGTACCAGAGCTTCTGAGCACGGACAGTCT-CACGACCCTTGCCCGCTTTCTC 1037035 Query 149048 GTATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTT 149107 ||| ||||| ||||| | || |||||| || |||| || ||||||| Sbjct 1037034 GTACTTCTCGTACAGGGCGACGAACTCGTCACCGTAGACGTCAGCGAGGCCAGGGCACTC 1036975 Query 149108 GTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGG 149167 || ||||||||||| | |||| |||||| | | || |||| ||| || |||||||| Sbjct 1036974 GTTGGGGCACATGAGTGTCCACTCGCCGTTCTGCTGGACACGCTCCATGAAGAGATCGGG 1036915 Query 149168 CACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCG 149227 | ||| || ||||| | ||| ||||| || || || ||| ||| | Sbjct 1036914 GATCCACAGAGCGTAGAAGAGATCGCGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTCCT 1036855 Query 149228 CAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCC 149287 |||| ||| | || ||| | ||| |||||||| ||||| | ||| | |||| || || Sbjct 1036854 GAGGTCGAGGAAGCCGAAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACC 1036795 Query 149288 CTTGCGCTTG---CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCAT 149344 ||||||| || ||||||||||||| ||| | ||||||| | || || | ||| Sbjct 1036794 GGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGGGCAGTGTTGTTGTAGACACGGAGCAT 1036735 Query 149345 AGGTTCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCAC 149404 || | || | | || ||||| || | ||| ||| || || | Sbjct 1036734 GGGGATGAGACCGTTCGATGTTCCGTTGGTTCCTCCGATGTAGGAGCCAGTGGCACGAAT 1036675 Query 149405 TTTGTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGATGGCCGCGCAGTCGCCGA 149463 ||| ||||||| ||| || ||||| || || ||| ||||| ||||||| || Sbjct 1036674 GCGGTGGACGTTGAGGCCAATTCCGCCAGCAGT-CTTGGAGATCAACGCGCAGGTCTTGA 1036616 Query 149464 GCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACA 149523 | || ||||||||||||||||||||| ||||||| | || ||||| || ||| Sbjct 1036615 GTGTGTCGTAGATGCCCTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGACGACA 1036556 Query 149524 TTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCT 149583 | ||||| | | |||||||| ||| | || || ||||||||| || || |||| Sbjct 1036555 TCTGCGGCGAGGGTGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGTGTGAAGTACTTCT 1036496 Query 149584 GGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGG 149643 | ||| ||||| | ||||| | || ||||| || |||||||| | || Sbjct 1036495 GCGACATGTAGTCGTATGTCTCGATGGCCTTCTCGATGTCCTCCATGTGGATGCCGACGG 1036436 Query 149644 CGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGT 149703 | || ||||| ||||| |||||||| ||||| || || ||| || ||||| || Sbjct 1036435 CAACACGCATGAGCATGTGCTGCGGGCGCTCGGCGACCTTGCCGTTGATGCGGAGCAGGT 1036376 Query 149704 AGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAA 149763 | | || || |||||| |||| ||| ||| ||||| ||||||||| ||| | | | Sbjct 1036375 ATGAGCGCTCGAGCGTCTTGAAGCCGAAGAACTGGTAGTTGAAGTCGCGGTCGTAGACGA 1036316 Query 149764 TGGCG 149768 ||||| Sbjct 1036315 TGGCG 1036311 >seq14 Length=1191321 Score = 125 bits (138), Expect = 7e-24 Identities = 345/523 (66%), Gaps = 23/523 (4%) Strand=Plus/Minus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || ||| || ||||| || ||||| || || || || ||||| | | ||||||||| | Sbjct 901151 CTGGTAGTCACCGACACGCTTCTCGAAGAAATTGGTCTTGCCGGCGAGCGAAATGTTCTC 901092 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470 ||| || ||||| |||||| | ||||| |||| || || | ||| | | |||||| Sbjct 901091 CATGAAATCGAAGGGGTTGGTAGCGTTGTAGTACTTGGGGTTGCCAAGGGCCAAGAGCAG 901032 Query 120471 TCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCG-CGTTCATGCCCAGCAACG 120529 ||||| || || ||||| ||||||| |||||| | || | |||||||||| |||| | Sbjct 901031 ACGGTCAGCAACGAACTCGATGTACTGACACATG-AGTGTGGCGTTCATGCCGAGCAGAG 900973 Query 120530 CCACCGGCAACGCCGACGTGAAA--AACTCCTTCTCAATGTCCACCGCCTCCTTGAACAT 120587 ||| || || || | ||| | ||||||| ||| || || ||||| Sbjct 900972 -CACAGGGAAGAGCGTC-TGACAGGAACTCCTGCTCGATTGTGACAGCCTC--------- 900924 Query 120588 GGCGAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAG-------TACA 120640 || || |||| | | | | | |||| | || | ||| | || ||| Sbjct 900923 GGTGATGATAGCCTCGACAGCCTCCTTG-CTGGGACGGTTGTTGAGGAGAGAAAACAACA 900865 Query 120641 GGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCA 120700 ||| ||||| || ||||||| |||||| || || || || ||||||||| || || | Sbjct 900864 AGCAGGCAAAATCTGTGTGCATGCCCTCATCACGAGAGATGAGCTCGTTGGAGAATGTGA 900805 Query 120701 GGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGA 120760 | |||||||||| || | | || | |||| |||| || ||| || |||| Sbjct 900804 GACCGGGCATGAGACCACGCTTTTTCAGCCAGAAGATGGACGCGAAGGAACCACTGAAGA 900745 Query 120761 ACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGT 120820 | | ||||| ||| || |||||||| | ||| | ||| || || | ||||| Sbjct 900744 AGATACCCTCAACGGCAGCGAAGGCGACGAGGCGGTTGGCGAATGTGGAGTTCTTGTCAG 900685 Query 120821 CGATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGG 120863 |||||| | ||||| |||||||| || || | ||| || Sbjct 900684 AGATCCATCGGAGAGCCCAGTCGGCCTTCTTCCGGATGCAGGG 900642 >seq4 Length=1699079 Score = 116 bits (128), Expect = 4e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| || ||||| |||||||| || | ||| ||| | ||||| |||||||| || Sbjct 982742 GTGGATTCCTTCTGAATATTGTAGTCCGAGAGTGTGCGACCA-TCCTCTAGCTGCTTACC 982684 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || || ||||| || || ||||||||||||||||| ||||| ||| Sbjct 982683 AGCGAAGATAAGGCGTTGCTGATCAGGGGGGATGCCTTCCTTGTCCTGAATCTTGCTCTT 982624 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||||| | |||||| || | ||||| || |||||||| || || Sbjct 982623 GACATTGTCGATAGTGTCGGATGACTCCACCTCAAGGGTGATCGTCTTGCCGGTGAGGGT 982564 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 982563 CTTGACGAAGATCTGCAT 982546 Score = 113 bits (124), Expect = 4e-20 Identities = 131/174 (75%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||||||| || || ||| | ||||||||||||||||| Sbjct 982230 GTGGACTCCTTCTGAATGTTGTAATCGGACAAAGTACGACCA-TCCTCGAGCTGCTTGCC 982172 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | ||||||||||| || ||||||||||||||||| ||||| ||| Sbjct 982171 GGCGAAGATCAAGCGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGAATCTTGCTCTT 982112 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 || | || | ||||||| | |||||| || | ||||| || || ||||| Sbjct 982111 GACATTGTCGATAGTGTCGGATGACTCCACCTCAAGGGTGATCGTCTTACCGGT 982058 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || || || ||| | |||| ||| ||| || | ||||||||| Sbjct 982970 GTCGACTCCTTCTGGATGTTATAGTCGGAAAGCGTGCGACC-GTCTTCCAACTGCTTGCC 982912 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||| || |||||||| ||||||||||| ||||| || ||||| ||| Sbjct 982911 GGCAAAGATGAGGCGTTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGAATCTTAGACTT 982852 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||||| ||| ||| || || | |||| ||| |||||||| || || Sbjct 982851 TACGTTGTCGATCGTGTCGCTGGACTCGACCTCCAATGTGATGGTCTTGCCGGTGAGGGT 982792 Query 133643 TTTTACGAAAATCTGCAT 133660 || || ||||| ||||| Sbjct 982791 CTTGACAAAAATTTGCAT 982774 >seq20 Length=976498 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/105 (80%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| ||| | ||| | | | ||||||||||||||||| Sbjct 715787 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA-TCCTCGAGCTGCTTGCC 715845 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 133567 ||| | ||||| ||||||||||| || || ||||| |||||||| Sbjct 715846 GGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 715890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483419482678320