Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq4 104 6e-17 >seq4 Length=1699079 Score = 104 bits (114), Expect = 6e-17 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 206192 TCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGC 206251 |||| || || |||||||| | || ||||| || ||||| |||| || ||| Sbjct 982056 TCACCGGTAAGACGATCACCCTTGAGGTGGAGTCATCCGACACTATCGACAATGTCAAGA 982115 Query 206252 AAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAA 206311 |||||||| || || ||||| || || ||| || | | ||||||||||| | Sbjct 982116 GCAAGATTCAGGACAAGGAAGGCATCCCCCCAGACCAGCAGCGCTTGATCTTCGCCGGCA 982175 Query 206312 AGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTC 206371 ||||| | || ||||| | |||||| ||||||||||| | ||||| ||||| ||||||| Sbjct 982176 AGCAGCTCGAGGATGGTCGTACTTTGTCCGATTACAACATTCAGAAGGAGTCCACTCTTC 982235 Query 206372 ACCTTGT 206378 |||| || Sbjct 982236 ACCTCGT 982242 Score = 87.8 bits (96), Expect = 4e-12 Identities = 140/198 (71%), Gaps = 5/198 (3%) Strand=Plus/Plus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTG--ACACA 206235 ||||| ||| || ||||| || || || ||||| ||||| || || || | | |||| Sbjct 982782 TTTTGTCAAGACCCTCACCGGCAAGACCATCACATTGGAGGTCGA--GTCCAGCGACACG 982839 Query 206236 GTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGA 206295 |||| |||||| |||||||| || || || || || || ||| ||| | Sbjct 982840 ATCGACAACGTAAAGTCTAAGATTCAGGATAAGGAGGGCATCCCTCCTGACCAGCAACGC 982899 Query 206296 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 206355 || ||||| ||||| |||||||||||||| || | || | |||| || ||| ||||| Sbjct 982900 CTCATCTTTGCCGGCAAGCAGTTGGAAGACGGTCGCACGCTTTCCGACTATAACATCCAG 982959 Query 206356 AAAGAGTCTACTCTTCAC 206373 || ||||| || || ||| Sbjct 982960 AAGGAGTCGACGCTGCAC 982977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181817499026778