Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq9 143 3e-29 seq14 96.9 3e-15 >seq9 Length=1465676 Score = 143 bits (158), Expect = 3e-29 Identities = 607/950 (64%), Gaps = 13/950 (1%) Strand=Plus/Minus Query 147465 aGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCA 147524 ||| ||||| |||||||| || ||| |||| | |||||| | |||||| | ||| Sbjct 1037256 AGAGGCCAGGTTGCAGACAGCGACCTCATCGGGAGCAGTGTACTCGATGATTTCAGTGCA 1037197 Query 147525 CAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTC 147584 ||||||| || ||| || | || | ||| ||||| |||| ||| || || Sbjct 1037196 CAGGTTGGAGCTGCGGATGGTACCAAGGTTCTTCTGGTTGCTCTTCCTGTTGGCAGCATC 1037137 Query 147585 TTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTATGC-A 147643 ||| |||||||| | || ||||||||| || | || | || | || | Sbjct 1037136 CTTGTAGAGCATGAAGGGGTTACCGGTCTCGGTCTGAGCCTCGAGAATGG-CGTACCAGA 1037078 Query 147644 GGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACC 147703 | | ||| || || || || ||| |||| | || |||||| |||||||| Sbjct 1037077 GCTTCTGAGCACGGACAGTCTCACGACCCTTGCCCGCTTTCTCGTACTTCTCGTACAGGG 1037018 Query 147704 GCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCG 147763 | |||||||| |||||| || || ||||| || |||| | || ||||| || | Sbjct 1037017 CGACGAACTCGTCACCGTAGACGTCAGCGAGGCCAGGGCACTCGTTGGGGCACATGAGTG 1036958 Query 147764 ACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACA 147823 |||| | ||| | | || || ||| || ||||| || | |||||| ||||| | Sbjct 1036957 TCCACTCGCCGTTCTGCTGGACACGCTCCATGAAGAGATCGGGGATCCACAGAGCGTAGA 1036898 Query 147824 TAAGATCGCGCGCTTTGCAATCCTCGGCGC--CCATGTTGCGTT-TCAAATTAAGCACGC 147880 |||||||| || || | |||| | || || | | | | | | || | || Sbjct 1036897 AGAGATCGCGGGC---GCGAACCTCCTCCTTGCCGTGGTTCTTCCTGAGGTCGAGGAAGC 1036841 Query 147881 TATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTT---C 147937 ||| ||| |||||||| || || | ||||| ||| | ||||| ||||| | Sbjct 1036840 CGAAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCGGGGCGCTTGTTGC 1036781 Query 147938 CGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGC 147997 | ||||||||||| | ||| | ||||||| | || || | |||||| || ||| Sbjct 1036780 CACCCTGGTCGACGTAGCGGGCAGTGTTGTTGTAGACACGGAGCATGGGGATGAGACCGT 1036721 Query 147998 TCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAA 148057 ||| || |||||||| ||| | | ||| ||| || | ||| ||||| | Sbjct 1036720 TCGATGTTCCGTTGGTTCCTCCGATGTAGGAGCCAGTGGCACGAATGCGGTGGACGTTGA 1036661 Query 148058 CGCCAATGCCGCC-GCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATG 148116 |||||| ||||| || || ||| || || ||||| | ||| ||||||| Sbjct 1036660 GGCCAATTCCGCCAGCAGT-CTTGGAGATCAACGCGCAGGTCTTGAGTGTGTCGTAGATG 1036602 Query 148117 CCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGC 148176 || ||||||||||| | || | | | | | || || || |||| ||||| | Sbjct 1036601 CCCTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGACGACATCTGCGGCGAGGGT 1036542 Query 148177 GTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGA 148236 || || || ||| || || || ||||| || || | || || ||| | Sbjct 1036541 GTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGTGTGAAGTACTTCTGCGACATGTAGTCG 1036482 Query 148237 TACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGC 148296 || ||||| || || | |||||||| || ||| ||||| | || || ||||||||| Sbjct 1036481 TATGTCTCGATGGCCTTCTCGATGTCCTCCATGTGGATGCCGACGGCAACACGCATGAGC 1036422 Query 148297 ATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGG 148356 |||||||| || || ||||| || | |||||| ||| || ||| ||||| Sbjct 1036421 ATGTGCTGCGGGCGCTCGGCGACCTTGCCGTTGATGCGGAGCAGGTATGAGCGCTCGAGC 1036362 Query 148357 GTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGC 148406 || ||| | || ||| ||| ||| | || || | ||||| ||||||| Sbjct 1036361 GTCTTGAAGCCGAAGAACTGGTAGTTGAAGTCGCGGTCGTAGACGATGGC 1036312 >seq14 Length=1191321 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/225 (70%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 47046 GAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGC 47105 ||||| || | ||||| ||||||| | | | || || ||| || |||| ||| Sbjct 900924 GAGGCTGTCACAATCGAGCAGGAGTTCCTGTCAGACGCTCTTCCCTGTGCTCTGCTCGGC 900983 Query 47106 ATGAACG-CACAGTCTATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCA 47164 ||||||| |||| || ||||| | || || ||||| || || || |||||| | || Sbjct 900984 ATGAACGCCACACTC-ATGTGTCAGTACATCGAGTTCGTTGCTGACCGTCTGCTCTTGGC 901042 Query 47165 GCTCGGACAACCGAAATATTTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTC 47224 || || | || || || | || ||| || || || || || ||| | |||||||| Sbjct 901043 CCTTGGCAACCCCAAGTACTACAACGCTACCAACCCCTTCGATTTCATGGAGAACATTTC 901102 Query 47225 GCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269 ||||| ||||| |||||||| |||||||| || ||||| || || Sbjct 901103 GCTCGCCGGCAAGACCAATTTCTTCGAGAAGCGTGTCGGTGACTA 901147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476609901234480