Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq9 167 3e-35 seq14 150 3e-30 seq11 125 1e-22 seq1 96.9 5e-14 >seq9 Length=1465676 Score = 167 bits (184), Expect = 3e-35 Identities = 273/395 (69%), Gaps = 19/395 (5%) Strand=Plus/Plus Query 259790 GTCGTCGAGCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGC--CATTATGGGTTTG 259847 |||| |||||| || ||| | |||||||||||||| ||| | ||| | |||| Sbjct 1036399 GTCGCCGAGCGCCCGCAGCACATGCTCATGCGTGTTGCCGTCGGCATCCACATGGAG--- 1036455 Query 259848 CCGACGTCGACAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGT 259907 ||| |||| || || | ||| || ||||| |||||||||| ||| Sbjct 1036456 --GACATCGAGAAGGCCATCGAG------------ACATACGACTACATGTCGCAGAAGT 1036501 Query 259908 TGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGT 259967 ||||| || |||| |||||||| || |||||||| || ||||||| |||| Sbjct 1036502 ACTTCACACACGCCTCGCCGACGCTCTTCAACGCCGGCACACCCTCGCCGCAGATGTCGT 1036561 Query 259968 CGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGC 260027 | ||||| || | |||||||||| || |||||||||||||| ||||| |||||| Sbjct 1036562 CCTGCTTCCTCATCGACATGAAGGAGGACAGCATCGAGGGCATCTACGACACACTCAAGA 1036621 Query 260028 AGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCG 260087 |||||| | ||||||||| | || ||||| || || | || ||| | || | Sbjct 1036622 CCTGCGCGTTGATCTCCAAGACTGCTGGCGGAATTGGCCTCAACGTCCACCGCATTCGTG 1036681 Query 260088 CCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTC 260147 || | ||| ||||| | | || |||||||| || ||||| || | |||||||| | Sbjct 1036682 CCACTGGCTCCTACATCGGAGGAACCAACGGAACATCGAACGGTCTCATCCCCATGCTCC 1036741 Query 260148 GCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 | || | ||| |||| || ||||||||||||||| Sbjct 1036742 GTGTCTACAACAACACTGCCCGCTACGTCGACCAG 1036776 Score = 114 bits (126), Expect = 2e-19 Identities = 297/452 (66%), Gaps = 20/452 (4%) Strand=Plus/Plus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || ||| ||||||| || ||||| ||| |||||| || || |||||||| ||| || Sbjct 1036777 GGTGGCAACAAGCGCCCCGGTGCCTTCGCCATCTACCTCGAGCCATGGCACGCTGACGTC 1036836 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 || || || ||||||| |||||||||||||||| |||| || ||| ||| Sbjct 1036837 TTCGGCTTCCTCGACCTCAGGAAGAACCACGGCAAGGA----GGAGGTTCG--CGCCCGC 1036890 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGG--CC 261965 |||||||| |||| ||||||| ||| || || ||| || || | | | | Sbjct 1036891 GATCTCTTCTACGCTCTGTGGATCCCCGATCTCTTCATGGAGCG--TGTCCAGCAGAACG 1036948 Query 261966 GCGACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGG 262025 |||| ||| | ||| | ||||| |||| || ||||| || ||| || | | Sbjct 1036949 GCGAGTGGACACTCATGTGCCCCAACGAGTGCCCTGGCCTCGCTGACGTCTACGGTGACG 1037008 Query 262026 CCTTTGACGCCCTCTATGAGNNNNNNNNNNNNNNNNNNNNNNCGCG---GACCGTC-GTG 262081 || | |||||| || ||| || ||| ||| ||| Sbjct 1037009 AGTTCGTCGCCCTGTACGAGAAGTACGAGAAAGCGGGCAAGGGTCGTGAGACTGTCCGTG 1037068 Query 262082 CCCGCACGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTAC 262141 | | | || |||||| |||||| ||| ||| || | ||||||||| | |||| | Sbjct 1037069 CTCAGA----AGCTCTGGTACGCCATTCTCGAGGCTCAGACCGAGACCGGTAACCCCTTC 1037124 Query 262142 ATGGTCTACAAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA-CGAC 262200 ||| |||||||||| || | |||| || ||||||||| ||||||| || |||| | | Sbjct 1037125 ATGCTCTACAAGGATGCTGCCAACAGGAAGAGCAACCAGAAGAACCTTGGTACCATCCGC 1037184 Query 262201 AGAGGCCAACCTGTGCACCGAGATCGTCCAGT 262232 || ||||||||||||| || ||| || ||| Sbjct 1037185 AGCT-CCAACCTGTGCACTGAAATCATCGAGT 1037215 Score = 107 bits (118), Expect = 3e-17 Identities = 347/538 (64%), Gaps = 12/538 (2%) Strand=Plus/Plus Query 262879 TGGGACTGGGACGCACTGCGGGCGTCGGTTCGACAGCATGGCCTGCGCAACTCGTTGCTC 262938 ||||||||||| || ||| |||| | || ||||| || | ||||||||| | ||| Sbjct 1037650 TGGGACTGGGAGGCGCTGAAGGCGAAGATTGCTCAGCACGGTGTCCGCAACTCGCTACTC 1037709 Query 262939 GTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGTTCGAG 262998 || |||| |||||| || ||| | || || ||||| || ||||||| |||| |||||| Sbjct 1037710 GTCGCGCCCATGCCTACTGCCTCCACCTCCCAGATTCTCGGCAACAACGAGTGCTTCGAG 1037769 Query 262999 GTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGGTCAAC 263058 | ||| ||||||||| | ||||||||||| | || || || || |||||| Sbjct 1037770 CCCTACACATCGAACATCTACTCTCGCCGCGTGCTTGCTGGTGAGTTCCAGGTTGTCAAC 1037829 Query 263059 CGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGGACGCCCGACTTTCGCGACCGG 263118 | | || ||||| | |||| | || || ||||| || | |||| Sbjct 1037830 CCCTGGTTGCTCAAGGACCTGGTCGACATGGGTCTCTGGACCGAGAACATGAAGAACCGC 1037889 Query 263119 CTCATTGCGGCACAGGGCTCGGTGCAGGGCTTTGACGACGAGGAGGTGCCGCCCGATCTC 263178 |||| || | || || | ||| || | | || | || ||| || Sbjct 1037890 ATCATCGCTGAGGGTGGTTCCATTCAGCGCATCCCCAAC------ATCCCTGACGAGATC 1037943 Query 263179 AAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATTGATATGGCGGCC 263238 ||| |||| | ||||||||| |||||| | | | || | ||| | ||||| || Sbjct 1037944 AAGACTCTGTACAAGACCGTCTGGGAGATCTCGCAGCGTACCATCATCCAGATGGCCGCT 1038003 Query 263239 GACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCGACCCGAC- 263297 ||||| | ||| |||| ||| ||||| || ||| | || | || || || Sbjct 1038004 GACCGTGGTGCCTTCATCGATCAGTCTCAGTCCCTGAACATCCACATGAAGGAGCCTACT 1038063 Query 263298 --GGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCAAGACTGGC 263355 || | || ||||| || |||||| | || ||| | ||| |||||||| ||| Sbjct 1038064 ATGGGCAAG---ATCACATCCATGCACTTCGCTGGCTGGAAGCTCGGTCTCAAGACCGGC 1038120 Query 263356 ATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCGATCAGG 263413 |||||||| || || ||| | | ||| | ||||||| ||||| ||||| |||| Sbjct 1038121 ATGTACTACCTCCGTACCATGGCTGCTTCTGCACCCATTCAGTTCACTGTCGACCAGG 1038178 >seq14 Length=1191321 Score = 150 bits (166), Expect = 3e-30 Identities = 209/288 (73%), Gaps = 5/288 (2%) Strand=Plus/Plus Query 1455779 TGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGG 1455838 ||| | |||||| || ||||||||||| || || |||||||| |||||| |||| ||| Sbjct 900259 TGGCAGATGTAC-AAGAAGGCCGAGGCTTCTTTCTGGACCGCTGAGGAGATCGATCTCTC 900317 Query 1455839 CGCCGACACGGTCCACTGGGT--GTCGC-TGAGCGACGACGAGCGCCATTTCATCAAGCA 1455895 | ||| | ||||| | ||| | | |||||||||||| |||||| || Sbjct 900318 CAAGGACCTTCACGACTGGAACAGGCGCCTCAATGACGACGAGCGCTTCTTCATCTCCCA 900377 Query 1455896 CGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCT 1455955 ||| |||||| || ||||||||| ||||||||| || ||||||||| | || |||| Sbjct 900378 CGTTCTCGCC-TTCTTCGCCGCCTCCGATGGCATTGTCAACGAGAACCTTGTCGAGCGCT 900436 Query 1455956 TTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCG 1456015 | ||||| ||| | || ||||| |||| || ||||| ||||||||| || | Sbjct 900437 TCTCCGGCGAGGTTCAAATCCCCGAGGCCCGTTGCTTCTACGGCTTCCAGATCATGATGG 900496 Query 1456016 AAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCA 1456063 | ||| ||||| | || || ||||| ||||| |||||||| ||| ||| Sbjct 900497 AGAACGTCCACGCCGAGACATACTCTCTCCTCATCGACACATACATCA 900544 Score = 104 bits (114), Expect = 3e-16 Identities = 185/261 (71%), Gaps = 8/261 (3%) Strand=Plus/Plus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTT--TGTCAGCGAGTCGCTGCCGGTGG 1456580 |||||| |||||| ||| |||||| | ||||| |||||| || | || ||| Sbjct 900915 ATCATCACCGAGGCTGTCACAATCGAGCAGGAGTTCCTGTCAGACGCTCT-TCCCTGTG- 900972 Query 1456581 CGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCG 1456640 | || |||||||||||||||| |||||||| |||||||| || || || || ||||| Sbjct 900973 CTCTGCTCGGCATGAACGCCACA-CTCATGTGTCAGTACATCGAGTTC-GTTGCTGACCG 901030 Query 1456641 CCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGA 1456700 |||||| ||| || ||| | ||| ||||| | ||||||| ||| | | Sbjct 901031 TCTGCTCTTGGCCCTTGGCAACCCC-AAGTACTACAACGCTACCAACCCCTTCGATTTCA 901089 Query 1456701 TGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACG 1456759 ||||| || ||||||| ||||||||||| || |||||| || || || || ||| Sbjct 901090 TGGAGAACATTTCGCTCGCCGGCAAGACCAATTTCTTCGAGAAGCGTGTCGGTGACTACC 901149 Query 1456760 CCAAGGCCGGCGTCACCGCCA 1456780 |||||||| |||| |||| Sbjct 901150 AGAAGGCCGGTGTCATGGCCA 901170 >seq11 Length=1322403 Score = 125 bits (138), Expect = 1e-22 Identities = 269/397 (68%), Gaps = 4/397 (1%) Strand=Plus/Minus Query 332852 TGGGCGTCAGTGAGGCGCACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATG 332911 |||||||| |||||||| | ||||||||||||| || ||| || |||| ||||||| Sbjct 1216921 TGGGCGTCTGTGAGGCGGGCGTAGCGCAGGATGGCGCAGCGGGATTGGAGGGGCTCGATG 1216862 Query 332912 ACCATTGACGACGTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATG 332971 | | | ||| ||||| || | || || || ||||| | | | |||||||| Sbjct 1216861 ATCTTGTTGGACTGATTGCATGCGAATGCGAAGCGAGTCGTGGCGCTGTAAATTTCCATG 1216802 Query 332972 GT-CGACCGGAGGGCCTGTTGGGCCGCCGGC-GTGAGGCAGTCGGCCTCGTCGAGGATGA 333029 || |||| | ||||| || ||||| |||| || | || ||| || ||||||||||||| Sbjct 1216801 GTTCGAC-GCAGGGCTTGCTGGGC-GCCGCTAGTCATGCTGTCTGCTTCGTCGAGGATGA 1216744 Query 333030 TGATCTTGTGGCGCCCGTGCGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCT 333089 || ||| || || || | ||||| || | ||| ||| | ||| || | | Sbjct 1216743 CGAGCTTTTGCCGGCCAGGAGGCAGTGTGACTTTCTTCTGCGCGAAGCCTTTTATCCTGT 1216684 Query 333090 TGCGCACGACGTCCACGCCGCGCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGG 333149 | || |||||||| | |||||| || || || || ||||| ||||| ||||| || | | Sbjct 1216683 TTCGTACGACGTCGATGCCGCGTTCATCGGAGGCATTGAGCTCGAGTACGGCTTCCTTGT 1216624 Query 333150 CGGCCGCACCCAAGAGGACGCGCGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGG 333209 ||| | || | || | || ||||| ||| |||||| ||||| |||| | Sbjct 1216623 AGGCGTCGCCGAGTAGTTGTCTAGCAAGGCAGAGGATCGACGTGGTTTTGCCGATGCCTG 1216564 Query 333210 GCGGACCCGCCAGCAAGAGGTTGGGCATGTTGCCGTC 333246 || ||| | | | | || |||||||| ||||| Sbjct 1216563 GCATACCGGAGATGATCATGTGTGGCATGTTTCCGTC 1216527 >seq1 Length=2699176 Score = 96.9 bits (106), Expect = 5e-14 Identities = 121/165 (73%), Gaps = 6/165 (4%) Strand=Plus/Minus Query 724920 GTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATC 724979 || ||||||||||| |||||| |||| | ||| |||||| ||||||| ||| Sbjct 352989 GTCCTCAAGCAGGTCCACCCCGACACCGGT-----ATC-TCCAACCGCGCCATGTCCATC 352936 Query 724980 ATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCG 725039 |||||||||| ||||||||||| |||| ||| ||| |||||||||| || || Sbjct 352935 CTGAACTCGTTCGTCAACGACATCTTCGAGCGCGTCGCCACCGAGGCCTCCAAGCTCGCT 352876 Query 725040 CGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 || ||||||| ||| ||| | ||||||||||||||||| Sbjct 352875 GCCTACAACAAGAAGTCCACCATCTCCTCGCGCGAGATCCAGACC 352831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177790173499316