Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq4 122 9e-23 seq9 118 1e-21 seq13 91.5 1e-13 seq20 84.2 2e-11 >seq4 Length=1699079 Score = 122 bits (134), Expect = 9e-23 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 |||||||| || ||||| ||||| ||||||||||| ||| | || || || ||| Sbjct 982242 ACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCGGACAAAGTACGACCATCCTCG 982183 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| || || ||||| |||||||| || || || |||||||| || || ||| Sbjct 982182 AGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGA 982123 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| ||| | |||||||| || ||||| || || || || || ||| Sbjct 982122 ATCTTGCTCTTGACATTGTCGATAGTGTCGGATGACTCCACCTCAAGGGTGATCGTCTTA 982063 Query 134685 CCGGT 134689 ||||| Sbjct 982062 CCGGT 982058 Score = 114 bits (126), Expect = 1e-20 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||| | ||| || ||||||||||| ||||| ||||||| || Sbjct 982772 CCACCACGGAGACGGAGCACCAAGTGGAGTGTGGATTCCTTCTGAATATTGTAGT--CCG 982715 Query 134547 ACGGTGTGAGA--GTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | ||||| || || || ||||| || || || || || | || |||||||| || | Sbjct 982714 AGAGTGTGCGACCATCCTCTAGCTGCTTACCAGCGAAGATAAGGCGTTGCTGATCAGGGG 982655 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | |||||||| || || ||||| || ||||| ||| | |||||||| || |||| Sbjct 982654 GGATGCCTTCCTTGTCCTGAATCTTGCTCTTGACATTGTCGATAGTGTCGGATGACTCCA 982595 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || || || || || || ||||| | || || ||||| || ||||| Sbjct 982594 CCTCAAGGGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 982546 Score = 111 bits (122), Expect = 2e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||||| || || ||||| ||||| || |||||||||||| | ||| | Sbjct 982535 AGGCGCAGGACGAGATGCAGTGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGG 982476 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || || || ||||| || ||||||| |||||||||||| || || || || || Sbjct 982475 CCATCCTCAAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGATCTGGAGGGATACCCTCC 982416 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| || || ||||| ||| | || ||||| || || || |||||||| Sbjct 982415 TTGTCTTGGATCTTCGACTTGACGTTGTCAATGGTATCGGAGGACTCGACCTCGAGAGTG 982356 Query 134676 ATGGTTTTACCGGT 134689 ||||| || ||||| Sbjct 982355 ATGGTCTTGCCGGT 982342 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 134483 CTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC 134542 || ||| || | || || | ||| | ||| ||||| || ||||| || ||||| ||||| Sbjct 983004 CTGTCCACCACGAAGACGAAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTATAGTC 982945 Query 134543 GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGG 134602 | || ||| || ||| || | ||| ||||| ||||| || | || ||||| || || Sbjct 982944 GGAAAGCGTGCGACCGTCTTCCAACTGCTTGCCGGCAAAGATGAGGCGTTGCTGGTCAGG 982885 Query 134603 CGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTC 134662 || ||||| || || || ||||| || || || ||| | |||||| || || Sbjct 982884 AGGGATGCCCTCCTTATCCTGAATCTTAGACTTTACGTTGTCGATCGTGTCGCTGGACTC 982825 Query 134663 CACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | || ||||| || ||||| | || || || ||||||||||| Sbjct 982824 GACCTCCAATGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAAATTTGCAT 982774 >seq9 Length=1465676 Score = 118 bits (130), Expect = 1e-21 Identities = 560/879 (64%), Gaps = 17/879 (2%) Strand=Plus/Plus Query 7537 ATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGTGGCGGTGGGCATT 7596 ||||||||| | ||| || || || |||||||| |||| || || || ||||| Sbjct 1036387 ATCAACGGCAAGGTCGCCGAGCGCCCGCAGCACATGCTCATGCGTGTTGCCGTCGGCATC 1036446 Query 7597 CACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTCTTTGAAACAGTTT 7656 ||| || ||||| || ||| | || || ||| | ||||| ||| | || Sbjct 1036447 CACATGGAGGACATCGAGAAGGCCATCGAGACATACGACTACATGTCGCAGAAGTACTTC 1036506 Query 7657 ACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCGCCTCAATTGTCCTCGTGT 7716 || ||||| ||||| || | || ||| |||||| | |||| || |||| || || Sbjct 1036507 ACACACGCCTCGCCGACGCTCTTCAACGCCGGCACACCCTCGCCGCAGATGTCGTCCTGC 1036566 Query 7717 TTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACACGCTGCGCGA-TTG 7775 || | | |||| || ||||||||||| ||||| ||| |||| || | || || Sbjct 1036567 TTCCTCATCGACATGAAGGAGGACAGCATCGAGGGCATCTACGACACACT-CAAGACCTG 1036625 Query 7776 CGCCAATATTTCCAAATACGGC-GGCGGAATAGGTCTGAACGTAAACGACGTGCGCGCCA 7834 ||| || ||| || || || |||||||| || || ||||| || | | || |||| Sbjct 1036626 CGCGTTGATCTCC-AAGACTGCTGGCGGAATTGGCCTCAACGTCCACCGCATTCGTGCCA 1036684 Query 7835 ACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCG 7894 || | ||||| |||||||||| | | | |||| | |||||| | || | Sbjct 1036685 CTGGCTCCTACATCGGAGGAACCAACGGAACATCGAACGGTCTCATCCCCATGCTCCGTG 1036744 Query 7895 TGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGG---AAAGCGCAAAGGCGCCGCTG 7951 | | ||| ||| | | || | || |||||||| || |||||| || ||| | Sbjct 1036745 TCTACAACAACACTGCCCGCTACGTCGACCAGGGTGGCAACAAGCGCCCCGGTGCCTTCG 1036804 Query 7952 CCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCTAAATCTGCGTCGCAACA 8011 ||||||| | ||||| |||||||| ||| | | || | || | || | ||| Sbjct 1036805 CCATCTACCTCGAGCCATGGCACGCTGACGTCTTCGGCTTCCTCGACCTCAGGAAGAACC 1036864 Query 8012 TGGGTTGCGAAGACAGCAAAGCGCGCGATCTATTCTTCGGATTGTGGGTGCCCGATCTGT 8071 || || || || |||||||| |||| || ||||| | |||||||| | Sbjct 1036865 ACGGCAAGGAGGAGGTTCGCGCCCGCGATCTCTTCTACGCTCTGTGGATCCCCGATCTCT 1036924 Query 8072 TTATGAGGCGCGTTCATTTCGACGCACAATGGTCGCTCATGTGCCCCGATCGTTGCCCTT 8131 | ||| ||| || || ||| | ||| | |||||||||||| | |||||| Sbjct 1036925 TCATGGAGCGTGTCCAGCAGAACGGCGAGTGGACACTCATGTGCCCCAACGAGTGCCCTG 1036984 Query 8132 TATTAAAAAACGTTTACGGTTCAAAATTTGAACAATTGTACAAACAATACGAACACGACG 8191 | |||| |||||| | || | ||||| | | ||||| | | | Sbjct 1036985 GCCTCGCTGACGTCTACGGTGACGAGTTCGTCGCCCTGTACGAGAAGTACGAGAAAGCGG 1037044 Query 8192 GC--GCGTACGTGCGGCAAGTGAAAGCGCGCGACCTGCACCG---CGCCATTATCGAATG 8246 || | || |||| | | || | || | | || | | ||||||| |||| Sbjct 1037045 GCAAGGGT-CGTGAG---ACTGTCCGTGCTC-AGAAGCTCTGGTACGCCATTCTCGAGGC 1037099 Query 8247 TCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAACGCCAAAAGCAA 8306 ||| | ||| ||||||| || | |||||| ||||| || ||| |||| || ||||| Sbjct 1037100 TCAGACCGAGACCGGTAACCCCTTCATGCTCTACAAGGATGCTGCCAACAGGAAGAGCAA 1037159 Query 8307 TCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATTGTACAGTACAG 8366 || | ||| | || ||||| | || ||| |||||| ||||||| | |||||| Sbjct 1037160 CCAGAAGAACCTTGGTACCATCCGCAGCTCCAACCTGTGCACTGAAATCATCGAGTACAC 1037219 Query 8367 CGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGT 8405 || ||||| || || || || ||||| || || || || Sbjct 1037220 TGCTCCCGATGAGGTCGCTGTCTGCAACCTGGCCTCTGT 1037258 >seq13 Length=1247346 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || ||||| || || || ||||| || |||||||||||| Sbjct 565613 CCACCACGGAGGCGGAGGACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAG 565554 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| |||||||| ||||| ||||| ||||| |||||||| || || || Sbjct 565553 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCCGGGGGA 565494 Query 134607 ATGCCTTCTTTTTCTTGAATTTT 134629 ||||| || || || || || || Sbjct 565493 ATGCCCTCCTTGTCCTGGATCTT 565471 >seq20 Length=976498 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| || ||||| ||||| || |||||||||||| | |||| | Sbjct 715766 AGGCGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 715825 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || |||||||| ||||| || || || | ||||||||| || || || ||||| || Sbjct 715826 CCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCC 715885 Query 134616 TTTTCT 134621 || ||| Sbjct 715886 TTGTCT 715891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505397022789360